Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq126 120 4e-22 seq330 114 2e-20 >seq126 Length=90294 Score = 120 bits (132), Expect = 4e-22 Identities = 300/445 (67%), Gaps = 18/445 (4%) Strand=Plus/Minus Query 112891 TTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTA 112950 |||| ||||||||| ||||||| ||||||||||| || |||||||| |||||| | || | Sbjct 10144 TTCGCAACAGTCTTCTGATGGCTCCAATGCCAACTGCTTCCACCGCGCAAATCCTCGGAA 10085 Query 112951 ATAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGA-GAAGAACCCTCGCGGGA 113009 | || |||| |||| || ||||| | ||||| || || | | | || | ||| Sbjct 10084 ACAACGAATCGATTGAGCCATACACCTCAAACATTTA-CTCACGTCGTGTGCTTTCCGGA 10026 Query 113010 GAGTTTGTGATTGTCAA--CAAGCAT-CTCGTGGATGACCTCAAAGAGATTGGTCTCTGG 113066 || || |||||| || || ||| ||| |||| | |||| || | ||| Sbjct 10025 GACTTCCAGATTGTTAATCCACACATGCTCAAGGAT---TTGGTTGAGAGAGGATTGTGG 9969 Query 113067 TCCAAGGATATGAAGGAT---CTCATGGTGAA-AGCGGGTGGTTCCATTCAAAATATTGT 113122 | | || |||||| || ||||| | || | | || ||||||||||| ||| Sbjct 9968 ACTGATGAGATGAAGAATCGACTCATCGCCAACAAC----GGATCCATTCAAAACATTCC 9913 Query 113123 GGATATTCCAGATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGA 113182 | || |||||||| || ||| | || | ||| || ||||||||| |||||| Sbjct 9912 CGGAATCCCAGATGACATCAAGGCACTCTATCTCACCGTGTGGGAAATCTCTCAGAAGGA 9853 Query 113183 TGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCT 113242 |||| || |||||||| |||||||| | |||||||||| |||| | || | Sbjct 9852 GATCATCGAGATGGCCGCCGATCGTGGAGCATACATTGATCAATCTCAATCGCTCAACAT 9793 Query 113243 ATTCATGGAAAGTCCAACGATGTCCAAGC-TCTCTTCTATGCACATGTACAGTTGGAAGA 113301 ||||| | |||| | | || | || | || |||||| | ||| | ||||||| Sbjct 9792 TCACATGGCTAAGCCAA-GCTACGCAGCCATCACATCGATGCACTTCTACGGATGGAAGA 9734 Query 113302 AGGGTCTCAAAACGGGGATGTATTA 113326 |||| ||||| || || ||||| || Sbjct 9733 AGGGACTCAAGACTGGAATGTACTA 9709 >seq330 Length=57129 Score = 114 bits (126), Expect = 2e-20 Identities = 254/379 (67%), Gaps = 13/379 (3%) Strand=Plus/Minus Query 176702 GGCCAGAAGTAGTGAATCATATTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTATCG 176761 |||||||||| ||| | | ||||| || || ||||||||||||||||| || | ||| Sbjct 1845 GGCCAGAAGTGGTGGACGAAATTGATAACAAGTCCCTTGATGTGGGAACCATCTTGATCC 1786 Query 176762 GCATCCGTCATGATCATGAGACGACCATACCGAAG---CTCGGAAACATC------TTGA 176812 ||| | ||||| ||| | || || || || || | || |||| || Sbjct 1785 TGATCAGCCATGACCATCATCTTTCCGTAACGGAGAGTCTTGAAATCATCATCTGTTTCG 1726 Query 176813 TAGTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGAGATCGTTGAACTCTTGGTTTGAT 176872 || | ||| | |||||| || | |||||| | | | |||||| ||| ||| Sbjct 1725 TACTTCTTTTTGTATTGAAGTCCGAGGATCTTGATCATAGCGTTGATCTCAGCATTTTCA 1666 Query 176873 GTGAGCTGTGTGACAGAGGCATCACGAACATTCTTACACTTCCCACGAAGAGGGAAGACA 176932 | | || | | | |||||||||||| | ||| |||||||| ||||||||| Sbjct 1665 GCAACTTGCTTCATGTTTCCGTCACGAACATTCAAAAGCTTTCCACGAAGTGGGAAGACA 1606 Query 176933 CCGTAGTGATCGCGACCAACCACAGAGAGACCCGCAACCGCGAGCGTTTTCGCAGAATCA 176992 || || | || |||||||| ||||| ||||| | ||| || | || || |||||||| Sbjct 1605 CCATACTTGTCACGACCAACAACAGATAGACCGGAAACGGCCAAAGTCTTGGCAGAATCT 1546 Query 176993 CCCTCTGTCACGATGAGTGTACA--CTTGCCAGATTGTGCCGTACCCGCCTTGTTCGCAT 177050 ||||| || | ||||||||| || ||| || | || || || || | ||| |||| Sbjct 1545 CCCTCGGTAAGGATGAGTGTGCATTGTTGGGAGTTCTTG--GTTCCTGCATCGTTTGCAT 1488 Query 177051 CATCCAATTTGGGAATACC 177069 | || | || || ||||| Sbjct 1487 CTTCAAGCTTCGGGATACC 1469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620623985627920