Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq126 122 1e-22 seq11978 89.7 6e-13 seq433 87.8 2e-12 >seq126 Length=90294 Score = 122 bits (134), Expect = 1e-22 Identities = 296/442 (67%), Gaps = 10/442 (2%) Strand=Plus/Plus Query 105595 ATAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGCATAGAAGAGA-GCT 105653 ||||||||| || ||||||||||| | ||||| |||| | ||||| || | || | Sbjct 9708 ATAGTACATTCCAGTCTTGAGTCCCTTCTTCCATCCGTAGAAGTGCATCGATGTGATGGC 9767 Query 105654 TGGACATCGTTGGACTTTCCATGAAAAGATTCATACTTTGACTCTGGTCAATGAAGCGAC 105713 || | | |||| | ||||| || || | |||| || |||||| | | Sbjct 9768 TGCGTAGC-TTGGCTTAGCCATGTGAATGTTGAGCGATTGAGATTGATCAATGTATGCTC 9826 Query 105714 CACGTTGTGCCGCCATATCAATGACATCCTTCATCTTGATTTCCCACACTGTGCGGTAGA 105773 |||| | || ||||| || |||| |||||| |||||||||||| ||| | |||| Sbjct 9827 CACGATCGGCGGCCATCTCGATGATCTCCTTCTGAGAGATTTCCCACACGGTGAGATAGA 9886 Query 105774 GATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAACCCCCCGCCTTGACCA 105833 | |||||| ||||||||||| | | || |||||||| || || ||| | | Sbjct 9887 GTGCCTTGATGTCATCTGGGATTCCGGGAATGTTTTGAATGGATCCGTTG---TTGGCGA 9943 Query 105834 TGAG---ATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGAT 105890 |||| || |||||| || | | ||| | || ||| | ||| |||| | | Sbjct 9944 TGAGTCGATTCTTCATCTCATCAGTCCACAATCCTCTCTCAACCAAATCCTTGAGCATGT 10003 Query 105891 GCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTC-TCAGATAGATGTTCGTCGTG 105949 | || |||||| || ||||| | || | | | || || ||||| | ||| Sbjct 10004 GTGGATTAACAATCTGGAAGTCTCCGGAAAGCACACGACGTGAG-TAAATGTTTGAGGTG 10062 Query 105950 TAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGT 106009 || || |||| |||| || || || | |||||| |||||||| || ||||||||||| Sbjct 10063 TATGGCTCAATCGATTCGTTGTTTCCGAGGATTTGCGCGGTGGAAGCAGTTGGCATTGGA 10122 Query 106010 GCCATCAAAAGACTGTTACGAA 106031 ||||||| ||||||||| |||| Sbjct 10123 GCCATCAGAAGACTGTTGCGAA 10144 >seq11978 Length=497 Score = 89.7 bits (98), Expect = 6e-13 Identities = 144/202 (71%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 116998 CGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATAAAGTCAAATGGA 117057 |||||||| |||||||||||||| ||||| | ||||| ||||| ||||| || || Sbjct 255 CGCTTCTCGAAGAAGTTGGTCTTTCCATCGATAGAGATGTTCTCCATGAAGTCGAAGGGG 314 Query 117058 TTCTTCGCGTTCCA-AATGGGTGGCACCCCAACTTGTTTGAGGAGACGATCCGACACATA 117116 |||||| | || | || | ||| ||||||| | ||| | | |||| | ||| | Sbjct 315 TTCTTCACTTTGTACAACTTCTCGCATCCCAACTCG-GCGAGCAAATGATCGGCGACAAA 373 Query 117117 CTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGA-GATTACATGGGAGTGCGT 117175 ||||||||||| ||||||| | | |||| || ||||| | | ||| ||| || || | Sbjct 374 CTCAATGTACTGGGACATCATGCGACAGTTTATTCCGATTATGTCTAC-TGGAAGAGCCT 432 Query 117176 CCAAGATGAACCCTTTCTCAAT 117197 | || |||| ||| ||||| Sbjct 433 CGGTGAGGAACTCTTGTTCAAT 454 >seq433 Length=49269 Score = 87.8 bits (96), Expect = 2e-12 Identities = 118/162 (73%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 116995 ACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATAAAGTCAAAT 117054 || |||||||| |||||||||||||| ||||| | ||||| ||||| ||||| || Sbjct 29765 ACGCGCTTCTCGAAGAAGTTGGTCTTTCCATCGATAGAGATGTTCTCCATGAAGTCGAAG 29824 Query 117055 GGATTCTTCGCGTTCCA-AATGGGTGGCACCCCAACTTGTTTGAGGAGACGATCCGACAC 117113 || |||||| | || | || | ||| ||||||| | || ||| |||| | || Sbjct 29825 GGGTTCTTCACTTTGTACAACTTCTCGCATCCCAACTCG-GCAAGCAGATGATCGGCGAC 29883 Query 117114 ATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGAT 117155 | |||||||||||| ||||||| | ||||||| ||||| Sbjct 29884 AAACTCAATGTACTGGGACATCAGGCGACAGTTCATTCCGAT 29925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589868253787640