Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq318 95.1 1e-14 >seq318 Length=58092 Score = 95.1 bits (104), Expect = 1e-14 Identities = 250/382 (65%), Gaps = 0/382 (0%) Strand=Plus/Plus Query 154723 TGATACCAGAGTCAGCACATGGAACTAATCCTGCTAGTGCTGTCATGGCAGGGATGAAAG 154782 |||| ||| || || |||||||| ||||||||| |||| ||||| ||||||| Sbjct 21165 TGATTCCAACATCCGCCCATGGAACCAATCCTGCTTCTGCTCAAATGGCCAATATGAAAG 21224 Query 154783 TTGTAGGTGTCAAGTGTGATGATGATGGTAACATAGACATCAAAGATCTAGAGAAGAAAG 154842 | || | ||| | | ||| | | || ||||| | ||| ||| | | || | Sbjct 21225 TGGTGGTTGTGGATTCTGACCACCACGGAAACATCAATTACAAGGATTTGGCTGCAAAGG 21284 Query 154843 CAATCATGAATACATTTGAACTGTCATGTATTATGATTACATACCCATCTACACATGGTG 154902 | | | || | | |||| || || ||| | || || ||||| || || || | Sbjct 21285 CTGAGAAGTATTCCAATCAACTCGCAGCCATCATGGTCACCTATCCATCCACTCACGGAG 21344 Query 154903 TATTTGAAACTAACATTAGACAGATATGTAAGATCGTTCATGACAATGGTGGTCAGGTAT 154962 |||| ||| || ||| | | | ||| | | |||||||| |||| || ||||| | Sbjct 21345 TATTCGAATCTTCGATTCGTGATGTTTGTGATAAGGTTCATGAGCATGGAGGGCAGGTTT 21404 Query 154963 ATCTTGATGGAGCAAATCTAAATGCACAGGTAGGACTAGCAAAACCATGTGAGTATGGTG 155022 || | |||||||| || | ||||| || |||||| | ||| | || |||||| Sbjct 21405 ATTTGGATGGAGCCAACATGAATGCTCAAGTAGGATTGTGCCGCCCAGGAGATTATGGTA 21464 Query 155023 CAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACATGGAGGTGGAGGTC 155082 || || | || | || || || || || |||||||||||||| ||||| || |||| Sbjct 21465 GCGACGTGTCCCACTTGAATTTGCACAAGACCTTCTGTATTCCACACGGAGGAGGTGGTC 21524 Query 155083 CTGGCGTAGGTCCTATAGGTGT 155104 | || || || || || || || Sbjct 21525 CAGGAGTTGGACCAATCGGAGT 21546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579102307918240