Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq318 87.8 2e-12 >seq318 Length=58092 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 159547 ATTATGATTACATATCCATCTACACATGGTGTATTTGAAACAAACATCAGACAGATATGT 159606 || ||| | || |||||||| || || || ||||| ||| | || | | | ||| Sbjct 21314 ATCATGGTCACCTATCCATCCACTCACGGAGTATTCGAATCTTCGATTCGTGATGTTTGT 21373 Query 159607 AAGATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAG 159666 | | ||||||||| |||| || ||||| ||| | ||||| || || | ||||| || Sbjct 21374 GATAAGGTTCATGAGCATGGAGGGCAGGTTTATTTGGATGGAGCCAACATGAATGCTCAA 21433 Query 159667 GTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATAAG 159726 ||||| | ||| | || |||||| || || | || | || || || ||| Sbjct 21434 GTAGGATTGTGCCGCCCAGGAGATTATGGTAGCGACGTGTCCCACTTGAATTTGCACAAG 21493 Query 159727 ACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGT 159779 || |||||||||||||| ||||| || ||||| || || || || || || || Sbjct 21494 ACCTTCTGTATTCCACACGGAGGAGGTGGTCCAGGAGTTGGACCAATCGGAGT 21546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587939021882960