Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1197 194 4e-44 >seq1197 Length=26491 Score = 194 bits (214), Expect = 4e-44 Identities = 176/222 (79%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | ||| || || ||||| ||||| || || || ||||| || | |||||| Sbjct 24122 TCTGAGACGGAGAACGAGATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGT 24181 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| ||||| ||||||||||| || |||||||| |||| ||| |||||||| || || || Sbjct 24182 TCTTCCATCCTCGAGCTGCTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGGATTCC 24241 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 || |||||||| ||||| |||||||||||| |||||||| ||| ||||| || || Sbjct 24242 CTCCTTGTCTTGGATTTTGGCCTTGACGTTCTCGATGGTGTCAGAAGCCTCCACCTCCAG 24301 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| | ||| ||||| ||||| ||||| ||||| | |||||| Sbjct 24302 GGTGATCGTTTTTCCAGTCAACGTTTTGACGAAGATTTGCAT 24343 Score = 176 bits (194), Expect = 1e-38 Identities = 162/205 (79%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| |||||||| || || || |||||||| |||| |||||||| ||||| |||||||| Sbjct 22676 GTGGAGAGTGGATTCCTTCTGGATATTGTAGTCGGAGAGAGTTCTTCCATCCTCGAGCTG 22735 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| |||| |||||||||||| ||||| ||||| ||||| ||||| || Sbjct 22736 CTTTCCGGCGAAGATGAGTCTTTGTTGGTCTGGTGGAATTCCTTCCTTGTCCTGAATCTT 22795 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||| || || |||||||| ||| || ||||| | || | |||||||| || Sbjct 22796 GGCCTTGACATTTTCGATGGTGTCAGAAGCCTCGACTTCCAAAGTGATAGTCTTTCCAGT 22855 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 | |||||| ||||| | |||||| Sbjct 22856 GAGAGTTTTCACGAAAATCTGCATT 22880 Score = 176 bits (194), Expect = 1e-38 Identities = 165/210 (79%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | |||||||||||| || || || |||||||| |||| |||||||| ||||| || Sbjct 23173 AACCAAGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGAGAGAGTTCTTCCATCCTC 23232 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||| || || || ||||||||||||| ||||| ||||| || || ||||| |||||||| Sbjct 23233 GAGTTGTTTTCCGGCGAAGATAAGTCTCTGTTGATCTGGTGGGATTCCTTCCTTGTCTTG 23292 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || ||||||||| |||||||| || || ||| ||||| ||||| | ||||| Sbjct 23293 GATCTTGGCCTTGACGTTTTCAATGGTATCGGAGGCTTCGACTTCGAGGGTGATGGTCTT 23352 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| |||||||| || || || | ||||| Sbjct 23353 TCCAGTCAAAGTCTTGACAAAGATCTGCAT 23382 Score = 168 bits (186), Expect = 1e-36 Identities = 171/223 (77%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | ||| | |||||| |||||||| ||||| || ||||| |||| || || Sbjct 22142 TCTGAGGCGGAGAACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAGAGGGT 22201 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||| ||||||||||| || |||||||| |||| || || ||||| ||||| || Sbjct 22202 ACGTCCATCCTCGAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGAATTCC 22261 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| |||||||| || || ||||||||||||||||||||| || ||| || ||||| Sbjct 22262 TTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCAGAGGCTTCAACCTCAAG 22321 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || | |||||||| || | || || ||||| | |||||| Sbjct 22322 AGTGATGGTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCATT 22364 Score = 154 bits (170), Expect = 3e-32 Identities = 170/224 (76%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAG 194977 |||||| | | ||| || || ||||| ||||| || || || |||||||| | |||| | Sbjct 23389 TCTGAGGCGAAGAACGAGATGGAGAGTCGACTCCTTCTGGATGTTGTAATCAGACAAG-G 23447 Query 194978 TTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGC 195037 | | ||||| || |||||||| || |||||||| |||| ||| || ||||| || || | Sbjct 23448 TGCGTCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGTCTTTGCTGATCTGGTGGGATTC 23507 Query 195038 CTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAA 195097 |||| |||||||| || || |||||||||||| ||||| || ||| ||| ||||| | Sbjct 23508 CTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGAAGCTTCGACTTCGA 23567 Query 195098 GGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 |||| | |||||||| || | || || ||||| | |||||| Sbjct 23568 GGGTGATGGTCTTTCCAGTGAGGGTCTTGACGAAGATCTGCATT 23611 Score = 143 bits (158), Expect = 6e-29 Identities = 160/211 (76%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTT 194989 ||| || ||||| || ||||| ||||| || ||||| |||| |||| || | || || | Sbjct 21645 AACGAGATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCGGACAAG-GTGCGTCCGTCCT 21703 Query 194990 CGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTT 195049 |||||||||| || |||||||| | || || || ||||| || || ||||| ||||||| Sbjct 21704 CGAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGTGGGATTCCTTCCTTGTCTT 21763 Query 195050 GAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCT 195109 | ||||| |||||||||||| ||||| || || ||| || || ||||| | |||| Sbjct 21764 GGATTTTAGCCTTGACGTTCTCGATGGTATCAGAGGCTTCAACCTCGAGGGTGATGGTCT 21823 Query 195110 TTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| || | ||| || ||||| | ||||| Sbjct 21824 TTCCGGTGAGAGTCTTGACGAAGATCTGCAT 21854 Score = 113 bits (124), Expect = 1e-19 Identities = 112/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| || ||||| | || || || ||||| || || ||||| |||||||| || || Sbjct 21992 CTTACCAGCAAAGATCAAACGCTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTT 22051 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||||||||| ||||| || || ||| ||||| ||||| | |||||||| || Sbjct 22052 GGCCTTGACGTTCTCGATGGTATCGGAGGCTTCGACTTCGAGGGTGATGGTCTTTCCAGT 22111 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 |||||| || ||||| | ||||||| Sbjct 22112 CAAAGTCTTGACGAAGATTTGCATT 22136 Score = 102 bits (112), Expect = 2e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055 ||||||| |||||||| |||| || || ||||| ||||| ||||| || || || || | Sbjct 23741 GCTTACCGGCGAAGATGAGTCTCTGCTGATCTGGTGGAATTCCTTCCTTATCCTGGATCT 23800 Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTG 195115 | ||| ||||||||||| || || ||| ||| ||||| || || | |||||||| | Sbjct 23801 TGGCCTTCACGTTCTCAATAGTATCTGAAGCTTCGACTTCGAGTGTGATGGTCTTTCCAG 23860 Query 195116 TCAAAGTTTTTACGAACACTTGCATT 195141 | | ||||| ||||| | |||||| Sbjct 23861 TGAGGGTTTTCACGAAGATCTGCATT 23886 Score = 87.8 bits (96), Expect = 4e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 |||| ||||| ||||| || || ||||| || || ||||| || |||||||||||| Sbjct 22524 AGTCTCTGTTGATCTGGTGGGATTCCTTCCTTATCCTGAATCTTGGCCTTGACGTTCTCG 22583 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAAC 195132 |||||||| ||| ||| || || ||||| | |||||||| || | || || ||||| Sbjct 22584 ATGGTGTCGGAAGCTTCGACCTCGAGGGTGATAGTCTTTCCGGTGAGGGTCTTGACGAAG 22643 Query 195133 ACTTGCAT 195140 | ||||| Sbjct 22644 ATCTGCAT 22651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109264661329187