Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1197 125 5e-24 seq1737 102 5e-17 >seq1197 Length=26491 Score = 125 bits (138), Expect = 5e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| || | | | ||||||||||| ||| || || || ||||| ||||| | Sbjct 22135 TTCCTCCTCTGAGGCGGAGAACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCGG 22194 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 | ||| | ||| |||| || ||||| |||||||| || || |||| ||||| ||| | | Sbjct 22195 AGAGGGTACGTCCATCCTCGAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTG 22254 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || |||||||| ||||| |||||| | || | ||| ||| |||| Sbjct 22255 GAATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCAGAGGCTTCAA 22314 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | || ||||| ||||| ||||| |||||||| ||||||||||| Sbjct 22315 CCTCAAGAGTGATGGTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCAT 22363 Score = 120 bits (132), Expect = 2e-22 Identities = 153/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||||| ||| ||| ||||| || || ||||| || || ||| | |||| || Sbjct 23173 AACCAAGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGAGAGAGTTCTTCCATCCTC 23232 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || ||||||||||| || || |||| || || ||| | || | || |||||||| Sbjct 23233 GAGTTGTTTTCCGGCGAAGATAAGTCTCTGTTGATCTGGTGGGATTCCTTCCTTGTCTTG 23292 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||||| |||||| | | || | || ||| || || |||| ||| ||||| || Sbjct 23293 GATCTTGGCCTTGACGTTTTCAATGGTATCGGAGGCTTCGACTTCGAGGGTGATGGTCTT 23352 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||| || | |||||| ||||||||||||||| Sbjct 23353 TCCAGTCAAAGTCTTGACAAAGATCTGCATA 23383 Score = 105 bits (116), Expect = 4e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||||||||| ||| | |||| || ||||| |||||||| || Sbjct 24153 TCCTTCTGGATGTTGTAGTCCGAAAGAGTTCTTCCATCCTCGAGCTGCTTTCCGGCGAAG 24212 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || |||| |||||||||| | || | ||||||||||| || || |||||| Sbjct 24213 ATGAGTCTTTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGGATTTTGGCCTTGACGTTC 24272 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| ||||| || || | ||| || |||||||| || | || || || Sbjct 24273 TCGATGGTGTCAGAAGCCTCCACCTCCAGGGTGATCGTTTTTCCAGTCAACGTTTTGACG 24332 Query 34971 AAGATCTGCAT 34981 ||||| ||||| Sbjct 24333 AAGATTTGCAT 24343 Score = 102 bits (112), Expect = 5e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| || || || | | | ||| |||| || ||||| |||||||| || Sbjct 23420 TCCTTCTGGATGTTGTAATCAGACAAGGTGCGTCCATCCTCAAGCTGCTTTCCGGCGAAG 23479 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || |||| |||||| ||| | || | || |||||||| ||||| |||||| Sbjct 23480 ATGAGTCTTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTC 23539 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || || || || |||| ||| ||||| ||||| ||||| ||||| || Sbjct 23540 TCGATGGTATCGGAAGCTTCGACTTCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTGACG 23599 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 23600 AAGATCTGCAT 23610 Score = 98.7 bits (108), Expect = 6e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || || ||||| ||||| || | | | ||| | || || ||||| ||||| || || Sbjct 21664 TCCTTTTGGATGTTGTAGTCGGACAAGGTGCGTCCGTCCTCGAGCTGCTTTCCAGCGAAG 21723 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | || ||||| ||| | || | || |||||||| || || |||||| Sbjct 21724 ATCAAACGCTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATTTTAGCCTTGACGTTC 21783 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| ||| ||||| |||| ||| ||||| ||||| ||||||||||| || Sbjct 21784 TCGATGGTATCAGAGGCTTCAACCTCGAGGGTGATGGTCTTTCCGGTGAGAGTCTTGACG 21843 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 21844 AAGATCTGCATA 21855 >seq1737 Length=20200 Score = 102 bits (112), Expect = 5e-17 Identities = 151/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||||| ||| || ||||| ||||| ||||| || || | ||| |||| || Sbjct 9799 AACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGTCCATCCTC 9858 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || || |||||||| || || | |||||||| ||| | || | || |||||||| Sbjct 9859 AAGTTGCTTTCCGGCGAAGATCAAGCGTTGCTGATCTGGTGGAATTCCTTCCTTGTCCTG 9918 Query 34892 AATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 ||||| ||||| || || || | || ||||| || |||| ||| || || Sbjct 9919 GATCTTAGCCTTGAC--ATTCTCGATGGTATCGGAAGCCTCGACCTCGAGGGTAATCGTC 9976 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||||| |||||||| || ||||| ||||| Sbjct 9977 TTACCCGTCAGAGTCTTGACGAAGATTTGCAT 10008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324573220280808