Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq350 149 5e-30 seq8705 132 4e-25 seq343 113 4e-19 seq1197 105 5e-17 seq868 100 2e-15 seq1737 93.3 3e-13 seq362 87.8 1e-11 >seq350 Length=55662 Score = 149 bits (164), Expect = 5e-30 Identities = 272/396 (69%), Gaps = 8/396 (2%) Strand=Plus/Plus Query 552210 AATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAA 552269 ||||||||||| || ||||||| |||||| || | ||||| || | ||||| ||| Sbjct 37319 AATCCAGATGAAGCCGTTGCCTTTGGTGCAGCGGTCCAAGCTGCCGTCCTTTCCGGAATC 37378 Query 552270 ACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTA 552329 | ||| | | | || || | | || || || || |||| | ||| || | Sbjct 37379 AAGGATCAGACCATCAAAGATGTCTTGCTCGTTGACGTGGCTCCATTGAGTCTCGGAATC 37438 Query 552330 GAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAA 552389 ||||||| ||||||| | ||||| || | |||||| | || || || ||||| || Sbjct 37439 GAAACAGCTGGAGGTGTCATGACAAACATCATCGATCGTAACACCACGATTCC----AAC 37494 Query 552390 AAAT--CTCGTGTATTTTCT--ACGTATTCAGATAATCAAACTGCTGTTACAATTCAAAT 552445 || ||| | |||| |||||||| || || ||| | | || | |||||| | Sbjct 37495 GAAGGCCTCCAAAACTTTCACCACGTATTCCGACAACCAACCAGGAGTATCCATTCAAGT 37554 Query 552446 TTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGA 552505 | |||||||||| | | | ||| || || ||| |||||||| || | | Sbjct 37555 CTATGAAGGAGAACGTGCAATGACTCGTGACAACCATCGTCTTGGTACATTCGAACTTTC 37614 Query 552506 AGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGC 552565 || || || || ||||| |||||||| || ||||||||||| ||||||||||||||||| Sbjct 37615 CGGAATCCCGCCAGCTCCACGTGGAGTTCCCCAAATTGAAGTCACTTTCGATATCGATGC 37674 Query 552566 CAATGGAATTTTGAATGTGACTGCTTGTGATAAATC 552601 ||||||||| | |||||| | ||| |||||||| Sbjct 37675 AAATGGAATTCTAAATGTGTCAGCTGAGGATAAATC 37710 Score = 104 bits (114), Expect = 2e-16 Identities = 318/489 (65%), Gaps = 6/489 (1%) Strand=Plus/Plus Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 ||||| || | |||||| |||| |||| ||||| ||||| || || | ||||| Sbjct 36248 GTTGAGATCCTCGCCAATTCGGAAGGAAACAAGACTACACCATCCTACGTGGCATTCACA 36307 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || ||||||| | || || || | || || |||| ||| | ||||||| ||| Sbjct 36308 GACACTGAACGACTCGTCGGAGACTCTGCGAAGGATCAGGCCGCCCGTAATCCAGAGAAT 36367 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 ||| | || ||||| ||| | || ||||||||| |||| | || || || ||||| | | Sbjct 36368 ACTGTATTCGATGCGAAAAGGTTGATTGGAAGACGTTTCGACGAGTCAACAGTTCAAGAA 36427 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATG--TTTCTGGAAAACCTTATATTGAAG 550289 || ||||||||||| ||| | ||| || | | | ||| | | || || Sbjct 36428 GACTGCAAGCATTGGCCGTTC---ACTGTCAAAGGAAAACAAGGAAAGCCAGTGGTGGAG 36484 Query 550290 CTACTCATG-AAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTA 550348 | || ||||| | ||| || || ||| |||| || | |||||| | Sbjct 36485 GTGGATGTGAAAGGAGAGAAGAGACAGTTCAATCCCGAAGAAATCTCGGCGATGGTTCTC 36544 Query 550349 ATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATA 550408 ||| ||||| |||| || | | | | || || || | || || || || Sbjct 36545 CAGAAGATGAAGGAAACCGCGGAAACGTATCTCGGACATTCTGTCAAAGACGCTGTGATT 36604 Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 |||||||| || ||||| || || || | ||||| || || ||||| | ||| Sbjct 36605 ACTGTACCTGCCTATTTCAACGATAGTCAGAGACAAGCCACAAAGGATGCAGCCACCATT 36664 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 |||||||| |||| | | || |||||||| || ||||||||||| | || |||||| Sbjct 36665 GCTGGACTCAATGCCATCAGAATCATCAATGAGCCAACTGCTGCTGCTTTGGCTTATGGA 36724 Query 550529 CTTGATAAA 550537 || || ||| Sbjct 36725 CTGGACAAA 36733 >seq8705 Length=1774 Score = 132 bits (146), Expect = 4e-25 Identities = 317/470 (67%), Gaps = 12/470 (3%) Strand=Plus/Minus Query 550074 AAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTG 550133 |||| |||| ||| || || || ||||| | ||||| || || |||| || || || | Sbjct 1743 AAGGAAACAAAACAACGCCTTCATATGTCGCCTTCACTGATACAGAACGATTGGTCGGAG 1684 Query 550134 ATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTT 550193 ||||||||||| ||||||| || | ||||| ||||| | || ||||| || | Sbjct 1683 ATGCAGCAAAAGATCAAGCAGCTCGAAATCCAGAGAATACAGTATTCGATGCGAAGAGAC 1624 Query 550194 TAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTCC 550253 | || || ||| | || |||| | || ||||| |||| || |||||||| || Sbjct 1623 TGATCGGCAGACGGTTCGATGAAGCAACAGTTCAATCAGACTGCAAACATTGGCCATTTG 1564 Query 550254 AAATTGTTAATGTTTCT---GGAAAACCTTATATTGAAGCTACTCATGAA-GGATCTGTT 550309 | || || | ||||| || ||||||| | ||||| ||| Sbjct 1563 GA---GTGAAAGGAAAACAAGGAAAGCCAGTGATTGAAGTTGAG-ATGAAAGGAGAAAAG 1508 Query 550310 AAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCC 550369 | ||||| || ||| |||| ||| | ||||| | ||| ||||| |||| || Sbjct 1507 AGGCAATTCAATCCGGAAGAAATCTCAGCAATGGTACTTCAGAAGATGAAGGAAACTGC- 1449 Query 550370 AGTG-CTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAA 550428 || | | | | || || | ||| | ||||||||| || |||||||| ||||| || || Sbjct 1448 AGAGACATACCTGGGACATGCAGTCAAGGATGCAGTCATTACTGTACCTGCATACTTCAA 1389 Query 550429 TGACTCACAACGTCAAGCTACTAAAGATGCTGG-ACGTATTGCTGGACTTAATGTTCTTC 550487 ||| || | ||||| || |||||||| | ||| ||||||||| | || | ||| Sbjct 1388 CGACAGTCAGAGACAAGCAACAAAAGATGCAGCCACG-ATTGCTGGATTGAACGCCATTC 1330 Query 550488 GTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAAA 550537 | || ||||||||||| ||||| ||||| ||||| |||||| | || ||| Sbjct 1329 GAATCATCAATGAACCAACTGCAGCTGCTCTTGCTTATGGATTGGACAAA 1280 >seq343 Length=56457 Score = 113 bits (124), Expect = 4e-19 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 550322 CCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCC-AGTGCTTTTGT 550380 |||||| || |||| | ||||| | | |||||||| |||| || ||| ||| | Sbjct 24230 CCAGAAGAAGTTTCGGCAATGGTCCTCACCAAAATGAAGCAAATCGCTGAGT-CTTACCT 24288 Query 550381 TGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACG 550440 || || ||||| | | || || | ||||| ||||||||||| || ||| | ||| | Sbjct 24289 CGGACACGAAGTGAAAAACGCCGTCGTCACTGTTCCAGCATATTTCAACGACGCCCAAAG 24348 Query 550441 TCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGA 550500 || || || || ||||| ||| ||| || ||||| |||||| |||| || ||||| || Sbjct 24349 ACAGGCCACCAAGGATGCCGGAACTATCGCAGGACTCAATGTTGTTCGCATCATCAACGA 24408 Query 550501 ACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 || || |||||||| | || ||||||||||| || Sbjct 24409 GCCAACAGCTGCTGCCATCGCTTATGGACTTGACAA 24444 Score = 89.7 bits (98), Expect = 4e-12 Identities = 105/141 (74%), Gaps = 1/141 (1%) Strand=Plus/Minus Query 361701 CAAGACCATAAGCTAATGAAGCAGCTGTTGGTTCGTTAATTATTTTAATAACATTGAGTC 361760 |||| |||||||| | | |||||||||||| ||||| || || || ||||||||||| Sbjct 24440 CAAGTCCATAAGCGATGGCAGCAGCTGTTGGCTCGTTGATGATGCGAACAACATTGAGTC 24381 Query 361761 CCGCTATTTTTGATGCATCTAAAGTGGCTTGACGTTGTGCATCATTAAAATATGCAGGAA 361820 | || || || ||||| ||||| || | ||| || || || |||||||| |||| Sbjct 24380 CTGCGATAGTTCCGGCATCCTTGGTGGCCTGTCTTTGGGCGTCGTTGAAATATGCTGGAA 24321 Query 361821 CAGTAATCACTGC-TTTTTCA 361840 |||| | || || ||||||| Sbjct 24320 CAGTGACGACGGCGTTTTTCA 24300 >seq1197 Length=26491 Score = 105 bits (116), Expect = 5e-17 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 |||||||| || | ||||| || ||| || |||||||| || | ||||||||| Sbjct 23165 AGACGGAGAACCAAGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGAGAGAGTTCTT 23224 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 ||| || |||||||||||||| || |||||||| || ||||| || || |||||||| Sbjct 23225 CCATCCTCGAGTTGTTTTCCGGCGAAGATAAGTCTCTGTTGATCTGGTGGGATTCCTTCC 23284 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGT 563435 || ||||| || || || || ||||| ||||| | | | | | |||||| || Sbjct 23285 TTGTCTTGGATCTTGGCCTTGACGTTTTCAATGGTATCGGAG-GCTTCGACTTCGAGGGT 23343 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 | || || ||||| | ||| || || || || |||||| Sbjct 23344 GATGGTCTTTCCAGTCAAAGTCTTGACAAAGATCTGCATA 23383 Score = 104 bits (114), Expect = 2e-16 Identities = 160/224 (71%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 563254 CTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAG 563311 ||||||||||| || ||||| || || ||| | ||| || ||||| || | |||| Sbjct 24123 CTGAGACGGAGAACGAGATGGAGAGTCGACTCCTTCTGG--ATGTTGTAGTCCGAAAGAG 24180 Query 563312 TTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTC 563371 ||||| ||| || || || |||||||| || || ||||||||||| || || || |||| Sbjct 24181 TTCTTCCATCCTCGAGCTGCTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGGATTC 24240 Query 563372 CTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCG 563430 | || || ||||| ||||| || || ||| || || |||| | | || || Sbjct 24241 CCTCCTTGTCTTGGATTTTGGCCTTGACGTTCTCGATGGTGTCAG-AAGCCTCCACCTCC 24299 Query 563431 AGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || | ||||| ||||| | ||||| ||||| |||||||| Sbjct 24300 AGGGTGATCGTTTTTCCAGTCAACGTTTTGACGAAGATTTGCAT 24343 Score = 91.5 bits (100), Expect = 1e-12 Identities = 155/223 (70%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 563254 CTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAG 563311 ||||| ||||| || | |||||||| ||| ||||| || ||||| || | || | Sbjct 22143 CTGAGGCGGAGAACCAAGTGAAGGGTGGACTCCTTTTGG--ATGTTGTAGTCGGAGAGGG 22200 Query 563312 TTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTC 563371 | | | ||| || || || |||||||| || || ||||| |||||||| || ||||||| Sbjct 22201 TACGTCCATCCTCGAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGAATTC 22260 Query 563372 CTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGA 563431 |||| || ||||| || || || || |||||| || |||| | | || | Sbjct 22261 CTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCAGAGGCTTCAACCTCAA 22320 Query 563432 GAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 |||| | || || || || || || || ||||| || ||||| Sbjct 22321 GAGTGATGGTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCAT 22363 Score = 89.7 bits (98), Expect = 4e-12 Identities = 157/224 (70%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 563254 CTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAG 563311 ||||| || || || ||||| || || ||| | ||| || |||||||||| | | Sbjct 23390 CTGAGGCGAAGAACGAGATGGAGAGTCGACTCCTTCTGG--ATGTTGTAATCAGACAAGG 23447 Query 563312 TTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTC 563371 | | | ||| ||||| || |||||||| || || |||||||||||||| || || |||| Sbjct 23448 TGCGTCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGTCTTTGCTGATCTGGTGGGATTC 23507 Query 563372 CTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCG 563430 |||| || ||||| || || || || ||| || ||||| | | || |||| Sbjct 23508 CTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGAAGCTTCGAC-TTCG 23566 Query 563431 AGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || | || || ||||| || || || ||||| || ||||| Sbjct 23567 AGGGTGATGGTCTTTCCAGTGAGGGTCTTGACGAAGATCTGCAT 23610 >seq868 Length=32787 Score = 100 bits (110), Expect = 2e-15 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 ||||| ||||| ||||| || || || ||||||||||| || || || || |||| ||| Sbjct 19906 ACTGTTCCAGCCTATTTCAACGATTCTCAACGTCAAGCCACCAAGGACGCCGGACAGATT 19847 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 | ||| | || ||||||||| |||||||||| || ||||| ||||| || || || ||| Sbjct 19846 TCCGGATTGAACGTTCTTCGTGTTATCAATGAGCCAACTGCCGCTGCTCTCGCCTACGGA 19787 Query 550529 CTTGATAA 550536 | || || Sbjct 19786 TTGGACAA 19779 >seq1737 Length=20200 Score = 93.3 bits (102), Expect = 3e-13 Identities = 156/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTC 563314 |||||||| || | |||||||| ||| | ||| || ||||| || | ||||| | Sbjct 9791 AGACGGAGAACCAAGTGAAGGGTGGACTCCTTCTGG--ATGTTGTAGTCGGAGAGAGTAC 9848 Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374 | ||| |||||||| |||||||| || || | | ||||||||| || |||||||||| Sbjct 9849 GTCCATCCTCAAGTTGCTTTCCGGCGAAGATCAAGCGTTGCTGATCTGGTGGAATTCCTT 9908 Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGA 563433 | || || || || || || || ||| || ||||| | | || ||||| Sbjct 9909 CCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTATCGGAAGCCTCGAC-CTCGAGG 9967 Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 |||| || ||||| || ||||| || ||||| |||||||| Sbjct 9968 GTAATCGTCTTACCCGTCAGAGTCTTGACGAAGATTTGCAT 10008 >seq362 Length=55147 Score = 87.8 bits (96), Expect = 1e-11 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 720788 CTCCATCCCTTCCTGCACGACCAATTTCTTGATAATATCCTTCAATATTTTTAGGTGCAC 720847 ||||||| || || || | || ||||||||||| || |||||||||||| || || Sbjct 13239 CTCCATCTCTGCCGGCTCTTCCCATTTCTTGATAGTAAGATTCAATATTTTTCGGACAAC 13180 Query 720848 CATAATGTATAACTGCTCTCACATCACTTTTATTTATTCCCATTCCAAAAGCAATCGTCG 720907 ||||||| || || | |||||| ||||| |||||||||||||| |||| || | Sbjct 13179 CATAATGAATGACATTCCGCACATCTGGTTTATCAATTCCCATTCCAAAGGCAACAGTTG 13120 Query 720908 CAACCATA 720915 |||| ||| Sbjct 13119 CAACGATA 13112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028488929492890