Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq1197 111 1e-19 >seq1197 Length=26491 Score = 111 bits (122), Expect = 1e-19 Identities = 171/244 (70%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 101239 ATTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATC 101298 || |||||| | | ||| | ||| | ||||||||| || || ||||| || ||||| || Sbjct 21624 ATCTCCTCCACGAAGACGGAGAACGAGATGAAGGGTCGACTCCTTTTGGATGTTGTAGTC 21683 Query 101299 GGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGG 101358 || | || | | || || | ||||| || || || ||||||||||| ||||| || Sbjct 21684 GGACAAGGTGCGTCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGG 21743 Query 101359 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTC 101418 || || ||||| || ||||| ||||| || || | || | || ||||| | ||| Sbjct 21744 TGGGATTCCTTCCTTGTCTTGGATTTTAGCCTTGACGTTCTCGATGGTATCAGAGGCTTC 21803 Query 101419 CACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTTACGCG 101478 || || || |||| || || ||||| | ||| || || || |||||||| | | || Sbjct 21804 AACCTCGAGGGTGATGGTCTTTCCGGTGAGAGTCTTGACGAAGATCTGCATACCTCCACG 21863 Query 101479 AAGA 101482 |||| Sbjct 21864 AAGA 21867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396204694818177