Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_018874.1 Length=211518 Score E Sequences producing significant alignments: (Bits) Value seq594 114 2e-20 >seq594 Length=40697 Score = 114 bits (126), Expect = 2e-20 Identities = 187/263 (71%), Gaps = 6/263 (2%) Strand=Plus/Minus Query 197023 AGATCCTCGTCGCTAAAGCCCGTACCGATCTTACAAATGGATTCGTA--CATCTGGTTGT 197080 ||||| || || | || || ||||||||||| || | |||||| | |||| |||| Sbjct 21040 AGATCATCATCAGTGAATCCAGTACCGATCTTGCAGACACTTTCGTATTCTTCTG-TTGT 20982 Query 197081 CGGGATTGTAACAGGCGAGTAAGAAAGCGCCGTAGGTTCCCGTTCTCTTTCCCACCCCGT 197140 ||| |||||||| | |||| | | ||||| ||| ||||||||||| ||| Sbjct 20981 TGGG-TTGTAACATCCAAGTAGATATCCTCCGTATACTCCAGTTCTCTTTCCATTTCCGA 20923 Query 197141 TGAAGCCTCCGATAACCACCAGATCCAGAGTGTCGCACACCCCTTCCATGTAATCTTTCT 197200 || || | || ||||| || ||||||| || || | || || || | ||| ||||||| Sbjct 20922 TGTAGGCACCCATAACAACAAGATCCAATGTATCTCCAACTCCGTCGACGTAGTCTTTCT 20863 Query 197201 TCAGTTTGAGCCAGCTTCTAGATC-TCTTGGCAATCTCGTAGGTTGCGTTTACGTCCAGG 197259 ||| ||| ||||| || || || | |||| | |||||| || || || | |||||| Sbjct 20862 TCATTTTCAGCCAACTCCTCGAACGTCTT-GAAATCTCATAAGTCGCTTCAGTGTCCAGT 20804 Query 197260 GTCTTGATCATCAATCCCTCGCA 197282 || |||||||| | |||||||| Sbjct 20803 GTTTTGATCATAAGACCCTCGCA 20781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 676600505369680