Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq1197 91.5 1e-13 >seq1197 Length=26491 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || ||| || || || |||||||| || || ||| ||| Sbjct 22662 AGGCGGAGCACCAAGTGGAGAGTGGATTCCTTCTGGATATTGTAGTCGGAGAGAGTTCTT 22721 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| ||||| || || |||| ||||| || | |||| || ||| Sbjct 22722 CCATCCTCGAGCTGCTTTCCGGCGAAGATGAGTCTTTGTTGGTCTGGTGGAATTCCTTCC 22781 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || ||| | | | || || ||||| || |||| || Sbjct 22782 TTGTCCTGAATCTTGGCCTTGACATTTTCGATGGTGTCAGAAGCCTCGACTTCCAAAGTG 22841 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| || | |||||| || ||||||||||| Sbjct 22842 ATAGTCTTTCCAGTGAGAGTTTTCACGAAAATCTGCAT 22879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380866748106303