Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq126 134 3e-26 seq433 114 2e-20 seq2416 105 1e-17 >seq126 Length=90294 Score = 134 bits (148), Expect = 3e-26 Identities = 397/610 (65%), Gaps = 4/610 (1%) Strand=Plus/Plus Query 213807 TCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTC 213866 |||| ||| | || |||||| || || || | ||| || || |||||| || | | Sbjct 11155 TCTC-GACACGCTTCATGAAAAGATCTGGAATCCAGAGAGCCAGGAACAGATCACGAGCA 11213 Query 213867 CTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGC 213926 | | ||| || ||| | ||| ||||| || | || || || | || |||||| Sbjct 11214 CGCTCCTCTTCTGGTCCGGTGTTCTTGCGAAGGGAAACGAACTCGAAAACATCGGCGTGC 11273 Query 213927 CACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTG---CCGCCCTGGTCCACCAGC 213983 || ||||| | ||| ||||| ||||| || || | |||| || || || || || Sbjct 11274 CATGGCTCGAGGTAAATGGCGAAGGCTCCTGGGCGCTTGTTGCCTCCTTGATCGACATAA 11333 Query 213984 CTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTT 214043 | ||| ||||| | | || || | |||| || || ||||| |||||||||| Sbjct 11334 CGGGCGGTGTTGTTGTAAACACGAAGCATCGGTATGAGTCCATTGGATGTTCCGTTGGTT 11393 Query 214044 CCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCG 214103 || || || ||| || | ||| | | || || | ||| || || |||||||| Sbjct 11394 CCAGCGATGGTCGATCCAGTGGCACGGATCTTATGCACGTTGAGTCCGATTCCACCGGCA 11453 Query 214104 TACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCT 214163 ||| ||||| | |||||| || ||| ||| || ||| ||| || || || Sbjct 11454 CTCTTAGAGATAAGGGCGCATTGCTTCAGAGTGTCGTAGATTCCGAGAATCGAATCCTCG 11513 Query 214164 GTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAGCCAGAGTTGAAAAGC 214223 | | ||| |||||||||| || | ||| || | | | | |||||||||||||| Sbjct 11514 CTCATTGTCAACAAGAAGCAGGAAGACATCTGTGGACGGCAGGTTCCAGAGTTGAAAAGA 11573 Query 214224 GTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGTCTCCAGGACTGAG 214283 || || |||||| |||| | | ||| | || |||| ||||| | | | | Sbjct 11574 GTAGGCGAAGCATGGGTCATGTAGCGCTCAGACATCAGATTGTACGTCTCGATGGCGGCC 11633 Query 214284 GGGATGTCGTGCTTGTGGATCTGTAGAGCGCACCTCATCAGCATGTGCTGGGGCCTCTCT 214343 ||||||||| |||||| | ||| | ||||||||| || || |||| || Sbjct 11634 TGGATGTCGTTTCCGTGGATTCCGATGGCGACGCGCATCAGCATCTGTTGTGGCCGTTCA 11693 Query 214344 ATGGGTCCTTTGGGGCCCTTGAGCAGGTAGGAGCGCTCCAGAGTCTTGAACCCAAAGTAG 214403 | | | | ||| |||||| ||||| ||||| ||||| |||||||| ||||||||| Sbjct 11694 ACGATTTCCTTGTTAATCTTGAGGAGGTAAGAGCGTTCCAGGGTCTTGAATCCAAAGTAG 11753 Query 214404 GAGTAGGTAT 214413 ||||| || Sbjct 11754 CTGTAGGAAT 11763 Score = 129 bits (142), Expect = 1e-24 Identities = 314/474 (66%), Gaps = 19/474 (4%) Strand=Plus/Plus Query 212582 CTTGGTGCGTAGATAGTACATGCCGGTCTTTAGGCCCTTGCCCCAGCCGTGCATGTGCAT 212641 |||||| || | ||||||||| || ||||| || ||||| ||| |||| | |||||| Sbjct 9696 CTTGGTACGCAAATAGTACATTCCAGTCTTGAGTCCCTTCTTCCATCCGTAGAAGTGCAT 9755 Query 212642 TGCTGTGAGTTTCTTC--AGCTTAATATTCTGGTCATCCTCGTGGCCCAGATGTAGGTTC 212699 | ||||| | || | ||||| || | | ||| | || | ||| Sbjct 9756 CGATGTGA-TGGCTGCGTAGCTT--------GG-------CTTAGCCATG-TGAATGTTG 9798 Query 212700 AGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATCTCTC 212759 || || ||| || || ||| ||| | | || |||||||| || ||||| || || Sbjct 9799 AGCGATTGAGATTGATCAATGTATGCTCCACGATCGGCGGCCATCTCGATGATCTCCTTC 9858 Query 212760 TGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGGGATG 212819 || |||| ||||||||||| ||| | | |||| ||| ||||||| ||||| ||| Sbjct 9859 TGAGAGATTTCCCACACGGTGAGATAGAGTGCCTTGATGTCATCTGGGATTCCGGGAATG 9918 Query 212820 TTCTGCACAGACCCCCTGTGTATGGTCAGCTGCAGGCGCATGTCCTCGTTCCAGAGGCCC 212879 || || | || || ||| | | || | ||| || || |||| | || Sbjct 9919 TTTTGAATGGATCCGTTGTTGGCGATGAGTCGATTCTTCATCTCATCAGTCCACAATCCT 9978 Query 212880 CTGGTCTCCAGGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACC 212939 || ||| ||||| || ||| || || || ||||||||||| || || ||||| Sbjct 9979 CTCTCAACCAAATCCTTGAGCATGTGTGGATTAACAATCTGGAAGTCTCCGGAAAGCACA 10038 Query 212940 CTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGT 212999 | | ||||| |||||| ||||| ||||| || |||||||| || || || || Sbjct 10039 CGACGTGAGTAAATGTTTGAGGTGTATGGCTCAATCGATTCGTTGTTTCCGAGGATTTGC 10098 Query 213000 GCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGC 213053 || ||| || || ||||| ||||||| ||| |||||||| | ||||||||| Sbjct 10099 GCGGTGGAAGCAGTTGGCATTGGAGCCATCAGAAGACTGTTGCGAACTCCGTGC 10152 >seq433 Length=49269 Score = 114 bits (126), Expect = 2e-20 Identities = 203/289 (70%), Gaps = 14/289 (5%) Strand=Plus/Plus Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250 || ||||| | || | || || | ||| || || | |||||||| ||| ||||||| Sbjct 30148 CCTGGCATCAATCCGCGCTTCTTCAACCAAAAGATGGAGGCGAAAGATCCACTGAAGAAG 30207 Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAG 48310 |||||||| || || ||||| || | || ||||| |||| || || ||||| || || Sbjct 30208 ATGCCCTCGACGGCGGCGAAAGCAATCAGTCTCTCGGCGAACGACGCCTTCTTATCCGAA 30267 Query 48311 ATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCG-TCTC---TATGGC 48366 ||||| ||| |||||||| ||||||||||||||| || ||| ||| ||||| Sbjct 30268 ATCCATTTAAGAGCCCAGTCGGCCTTCTTCTTGATGAAT----TCGAACTCGAAGATGGC 30323 Query 48367 CCGGAAGAGCTTCTTGCACTCACCTGCGTC--CGC-AACATAGGTAGTGAGCAGCTTTGC 48423 ||| || | | || | ||| | || ||| | || || || ||||||| Sbjct 30324 GTTGAACAG--TGTGTGACGCTCCTTC-TCATCGCGGATGTATGTCTCGATGAGCTTTGA 30380 Query 48424 GTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAG 48472 ||||||||| || || | ||||| || ||||| ||||| ||||||||| Sbjct 30381 GTACATCTCCGAATGGATGTTCTCGATGGCGATTTGGAAACCGTAGAAG 30429 >seq2416 Length=15437 Score = 105 bits (116), Expect = 1e-17 Identities = 217/319 (68%), Gaps = 4/319 (1%) Strand=Plus/Plus Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250 || ||||| | || | || || | ||| || || | ||||| || ||| ||||||| Sbjct 2341 CCTGGCATCAATCCGCGCTTCTTCAACCAAAAGATGGAGGCGAACGATCCACTGAAGAAG 2400 Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAG 48310 |||||||| || || || || || | || ||||| |||| || || ||||| || || Sbjct 2401 ATGCCCTCAACGGCGGCAAAAGCAATCAGTCTCTCGGCGAACGACGCCTTCTTATCCGAA 2460 Query 48311 ATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCA-TGGCA-TCGTCTCTATGGCCC 48368 ||||| ||| |||||||| ||||||||||||||| | | | | ||| || || Sbjct 2461 ATCCATTTAAGAGCCCAGTCGGCCTTCTTCTTGATGAACTCGAACTCG--AAGATTGCGT 2518 Query 48369 GGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACA 48428 ||| || | | | ||| |||| | || || | || || || | ||||| Sbjct 2519 TGAACAGTGTGTGACGCTCCTTCTCGTCGCGGATGTATGTCGCGATGAGTTTCGAGTACA 2578 Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488 |||| || || | ||||| || ||||| ||||| ||||||||| | |||||| | | Sbjct 2579 TCTCCGAATGGATGTTCTCGATGGCGATTTGGAAACCGTAGAAGAAGCGGGCCTCGGAGA 2638 Query 48489 CCTGCACTTCTGTGGAGAA 48507 ||| ||||| | ||||| Sbjct 2639 CCTTGACTTCATTCGAGAA 2657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931355098474240