Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq433 87.8 3e-12 seq126 87.8 3e-12 >seq433 Length=49269 Score = 87.8 bits (96), Expect = 3e-12 Identities = 115/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 26167 CTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCC-AGCTGGGACTCGC 26225 || ||| ||| |||||||||| ||| ||||| |||||||| |||| || ||||| || Sbjct 29907 CTGATGTCCCAGTACATTGAGTTTGTCGCCGATCATCTGCT-TGCCGAGTTGGGATGCGA 29849 Query 26226 CAGACTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAA 26285 | | |||| | ||||| |||||||| ||||| ||||| || | || || || Sbjct 29848 GAAGTTGTACAAAGTGAAGAACCCCTTCGACTTCATGGAGAACATCTCTATCGATGGAAA 29789 Query 26286 GACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCAA 26322 |||||||||||| || ||| | ||| ||| || ||| Sbjct 29788 GACCAACTTCTTCGAGAAGCGCGTCTCCGAGTACCAA 29752 >seq126 Length=90294 Score = 87.8 bits (96), Expect = 3e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 221065 CATCTCGTCCGTCCATAGACCCCTCTCTTCCAGCACCTTGACCATGTGCTTGTTCACCAC 221124 |||||| || ||||| | || ||||| ||| |||||| |||||| || || | Sbjct 9957 CATCTCATCAGTCCACAATCCTCTCTCAACCAAATCCTTGAGCATGTGTGGATTAACAAT 10016 Query 221125 TTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATGCT 221184 ||||| ||||| || ||||| | | ||| | ||| || ||| | || || || Sbjct 10017 CTGGAAGTCTCCGGAAAGCACACGACGTGAGTAAATGTTTGAGGTGTATGGCTCAATCGA 10076 Query 221185 CTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGACT 221244 |||||||| || ||||| || || ||| || || ||||| || |||| ||| ||||| Sbjct 10077 TTCGTTGTTTCCGAGGATTTGCGCGGTGGAAGCAGTTGGCATTGGAGCCATCAGAAGACT 10136 Query 221245 GTTGCGCAGTCCG 221257 |||||| | |||| Sbjct 10137 GTTGCGAACTCCG 10149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928667611243840