Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq1197 93.3 4e-14 >seq1197 Length=26491 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| || || || || || || ||||| ||| |||| ||| | || Sbjct 23382 ATGCAGATCTTTGTCAAGACTTTGACTGGAAAGACCATCACCCTCGAAGTCGAAGCCTCC 23323 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | ||||| || ||| ||||| || ||| | || ||||||| Sbjct 23322 GATACCATTGAAAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGATCAA 23263 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 |||||||||||||| || || |||||| | || ||| | |||| | |||| || || Sbjct 23262 CAGAGACTTATCTTCGCCGGAAAACAACTCGAGGATGGAAGAACTCTCTCCGACTACAAT 23203 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 || || || ||||| ||||| ||| |||| Sbjct 23202 ATCCAGAAGGAATCCACTCTTCACTTGGT 23174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425325677498919