Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq318 96.9 4e-15 >seq318 Length=58092 Score = 96.9 bits (106), Expect = 4e-15 Identities = 253/386 (66%), Gaps = 0/386 (0%) Strand=Plus/Minus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 || || || || || || || ||||| || ||||| |||||||||||||| ||||| || Sbjct 21546 ACTCCGATTGGTCCAACTCCTGGACCACCTCCTCCGTGTGGAATACAGAAGGTCTTGTGC 21487 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302 ||||| | || | || || |||||| || | ||| | ||||| || ||| Sbjct 21486 AAATTCAAGTGGGACACGTCGCTACCATAATCTCCTGGGCGGCACAATCCTACTTGAGCA 21427 Query 138303 TTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATATC 138362 || | || || ||||| | ||| ||||| || |||| |||||||| | | ||| | Sbjct 21426 TTCATGTTGGCTCCATCCAAATAAACCTGCCCTCCATGCTCATGAACCTTATCACAAACA 21367 Query 138363 TGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATACATGAG 138422 | | || | ||| ||||| || ||||| |||||||| || | ||| || || | Sbjct 21366 TCACGAATCGAAGATTCGAATACTCCGTGAGTGGATGGATAGGTGACCATGATGGCTGCG 21307 Query 138423 AGTTCAAATGTATTCATGATTGCTTTCTTCTCTAGATCTTTGATGTCTATGTTGCCATCA 138482 |||| | | || | | || || | | ||| ||| | ||||| || | Sbjct 21306 AGTTGATTGGAATACTTCTCAGCCTTTGCAGCCAAATCCTTGTAATTGATGTTTCCGTGG 21247 Query 138483 TCATCACACTTGACACCTACAACTTTCATTCCTGCCATGACTGCACTAGCAGGATTAGTT 138542 | ||| | | ||| | || |||||||| ||||| ||| ||||||||| ||| Sbjct 21246 TGGTCAGAATCCACAACCACCACTTTCATATTGGCCATTTGAGCAGAAGCAGGATTGGTT 21187 Query 138543 CCATGTGCTGACTCTGGTATCAGACA 138568 ||||| || || ||| ||||| || Sbjct 21186 CCATGGGCGGATGTTGGAATCAGGCA 21161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578887948817720