Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq611 120 4e-22 >seq611 Length=39809 Score = 120 bits (132), Expect = 4e-22 Identities = 140/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 47986 TCATGATTAAAAAGAATACCACTACAGGCATACATTCCGTATGATTCACGATAGTTCTTT 48045 |||||||| || ||||| ||| | ||||| |||| ||| | ||||||||||| Sbjct 21524 TCATGATTGAAGAGAATTCCATTGCAGGCGAACATGTTGTAGGCCTCACGATAGTTGACC 21465 Query 48046 ACTATCCAGTACCCATAGAGTTTTGCAACACCATAAGGAGAACGTGGATAGAAAGGTGTG 48105 || |||||||| || || | ||| |||||| |||| ||||| | ||||||||| || || Sbjct 21464 ACAATCCAGTATCCGTACATTTTGGCAACAGCATATGGAGATCTTGGATAGAATGGAGTC 21405 Query 48106 GTCTCTGTCTGTGGAGTCTCTTGCACCTTACCATAAAGTTCACTGGTGGATGCTTGATAG 48165 |||| | |||||| ||||||| || || || || | ||| || || ||||||||| Sbjct 21404 TTCTCACTTTGTGGAATCTCTTGTACTTTTCCGTATAATTCCGATGTCGACGCTTGATAG 21345 Query 48166 ATACGAACC 48174 | ||| ||| Sbjct 21344 AAACGGACC 21336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665367448624520