Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq126 140 4e-28 seq330 91.5 2e-13 seq11978 89.7 6e-13 seq433 87.8 2e-12 >seq126 Length=90294 Score = 140 bits (154), Expect = 4e-28 Identities = 299/442 (68%), Gaps = 10/442 (2%) Strand=Plus/Minus Query 76491 TTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTA 76550 |||| ||||||||| ||||||| ||||||||||| || |||||||| |||||| | || | Sbjct 10144 TTCGCAACAGTCTTCTGATGGCTCCAATGCCAACTGCTTCCACCGCGCAAATCCTCGGAA 10085 Query 76551 ATAATGAATGCTTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTG 76610 | || |||| |||| |||||||| ||||||| ||| | | || | || | Sbjct 10084 ACAACGAATCGATTGAGCCATACACCTCAAACATTTACTCACGTCGTGTGCTTTCCGGAG 10025 Query 76611 AGTTTGTCATTGTCAACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCA 76670 | || ||||| || ||| | |||| || | ||| || | ||| | Sbjct 10024 ACTTCCAGATTGTTAATCCACACATGCTCAAGGATTTGGTTGAGAGAGGATTGTGGACTG 9965 Query 76671 AGGATATGAAGGAT---CTCATGGTGAA-AGCGGGTGGTTCCATTCAAAATATCTCAGAT 76726 | || |||||| || ||||| | || | | || ||||||||||| || | | Sbjct 9964 ATGAGATGAAGAATCGACTCATCGCCAACAAC----GGATCCATTCAAAACATTCCCGGA 9909 Query 76727 ATCCCAGATGATATCAAGAATCTCTACCGCACAGTGTGGGAAATCAAGATGAAAGATGTC 76786 ||||||||||| |||||| ||||| | ||| |||||||||||| ||| || || Sbjct 9908 ATCCCAGATGACATCAAGGCACTCTATCTCACCGTGTGGGAAATCTCTCAGAAGGAGATC 9849 Query 76787 ATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTC 76846 || || |||||||| |||||||| | |||||||||| |||| | || | | Sbjct 9848 ATCGAGATGGCCGCCGATCGTGGAGCATACATTGATCAATCTCAATCGCTCAACATTCAC 9789 Query 76847 ATGGAAAGTCCAACGATGTCCAAGC-TCTCTTCTATGCATATGTACGCGTGGAAACAGGG 76905 |||| | |||| | | || | || | || ||||| | |||| ||||| |||| Sbjct 9788 ATGGCTAAGCCAA-GCTACGCAGCCATCACATCGATGCACTTCTACGGATGGAAGAAGGG 9730 Query 76906 GCTCAAAACCGGAATGTACTAT 76927 ||||| || |||||||||||| Sbjct 9729 ACTCAAGACTGGAATGTACTAT 9708 >seq330 Length=57129 Score = 91.5 bits (100), Expect = 2e-13 Identities = 217/323 (67%), Gaps = 9/323 (3%) Strand=Plus/Plus Query 13607 TGTACTCTCATTGTCACAGAGGGTGATTCGGCTAAAACCCTCGCGGTTGCGGGTCTCTCT 13666 || || ||||| | || ||||| ||||| || || || | || ||| | ||||| ||| Sbjct 1523 TGCACACTCATCCTTACCGAGGGAGATTCTGCCAAGACTTTGGCCGTTTCCGGTCTATCT 1582 Query 13667 GTCGTTGGTCGTGATCACTACGGTGTGTTCCCACTTCGCGGTAAATGTAAGAATGTTCGG 13726 || ||||||||||| | || ||||| ||||||||||| || || | ||||||||| Sbjct 1583 GTTGTTGGTCGTGACAAGTATGGTGTCTTCCCACTTCGTGGAAAGCTTTTGAATGTTCGT 1642 Query 13727 GACGCTTCGGTGGCACAGCTCACATCAAACCAGGAGTTCAACGATCTCAAGAAGATCCTT 13786 |||| || || | | ||| ||| |||||| | | | |||||||| Sbjct 1643 GACGGAAACATGAAGCAAGTTGCTGAAAATGCTGAGATCAACGCTATGATCAAGATCCTC 1702 Query 13787 GGTCTTCA--ACAAGGAAAAG-ACTACCAAGATG----TTTC-TGA-ACTTCGCTATGGT 13837 || ||||| |||| | ||| || | ||||| |||| || || || || || Sbjct 1703 GGACTTCAATACAAAAAGAAGTACGAAACAGATGATGATTTCAAGACTCTCCGTTACGGA 1762 Query 13838 CGTCTTATGATTATGACAGATGCCGATAATGATGGTTCTCACATCAAGGGTCTCATCCTA 13897 | ||| | ||| | ||| ||| | |||||||| ||||||||||| || | | Sbjct 1763 AAGATGATGGTCATGGCTGATCAGGATCAAGATGGTTCCCACATCAAGGGACTTGTTATC 1822 Query 13898 AATATGATCCACTACTTCTGGCC 13920 ||| | ||||| |||||||||| Sbjct 1823 AATTTCGTCCACCACTTCTGGCC 1845 >seq11978 Length=497 Score = 89.7 bits (98), Expect = 6e-13 Identities = 144/202 (71%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 65305 ATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATC-TCATCGGTATGAACTCTGA 65363 ||||| ||| |||| || || || || ||| ||| | | ||||| || |||| | Sbjct 454 ATTGAACAAGAGTTCCTCACCGAGGCTCTTCCA-GTAGACATAATCGGAATAAACTGTCG 396 Query 65364 GAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGGTGCC 65423 | ||||||| |||||||||||| ||| | |||| | | ||| | ||||||| ||| Sbjct 395 CATGATGTCCCAGTACATTGAGTTTGTCGCCGATCATTTGCTCGC-CGAGTTGGGATGCG 337 Query 65424 ACCCATT-TGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGA 65482 | || | || | |||||| || || ||||| ||||| ||||| | ||||| | Sbjct 336 AGAAGTTGTACAAAGTGAAGAACCCCTTCGACTTCATGGAGAACATCTCTATCGATGGAA 277 Query 65483 AGACCAACTTCTTTGAGAAGCG 65504 ||||||||||||| |||||||| Sbjct 276 AGACCAACTTCTTCGAGAAGCG 255 >seq433 Length=49269 Score = 87.8 bits (96), Expect = 2e-12 Identities = 118/162 (73%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 65347 ATCGGTATGAACTCTGAGAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTC 65406 ||||| ||||||| | ||||||| |||||||||||| ||| | |||| ||| || Sbjct 29925 ATCGGAATGAACTGTCGCCTGATGTCCCAGTACATTGAGTTTGTCGCCGATCATCTGCTT 29866 Query 65407 AAACAAGTTGGGGTGCCACCCATT-TGGAACGCGAAGAATCCATTTGACTTTATGGAAAA 65465 | ||||||| ||| | || | || | |||||| || || ||||| ||||| || Sbjct 29865 GC-CGAGTTGGGATGCGAGAAGTTGTACAAAGTGAAGAACCCCTTCGACTTCATGGAGAA 29807 Query 65466 CATTAGCCTTGATGGGAAGACCAACTTCTTTGAGAAGCGAGT 65507 ||| | ||||| |||||||||||||| |||||||| || Sbjct 29806 CATCTCTATCGATGGAAAGACCAACTTCTTCGAGAAGCGCGT 29765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596455796891680