Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq1197 116 7e-21 >seq1197 Length=26491 Score = 116 bits (128), Expect = 7e-21 Identities = 135/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 ||||| |||||||| | ||||| ||| || | |||||||||||| || || | |||| Sbjct 23201 ATATTGTAGTCGGAGAGAGTTCTTCCATCCTCGAGTTGTTTTCCGGCGAAGATAAGTCTC 23260 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 |||||||| || || |||||||| || ||||| || |||| || | ||| ||| ||| Sbjct 23261 TGTTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCAATGGTA 23320 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 ||||| | || ||||| || || || || || || || | || || ||||| || ||| Sbjct 23321 TCGGAGGCTTCGACTTCGAGGGTGATGGTCTTTCCAGTCAAAGTCTTGACAAAGATCTGC 23380 Query 193359 AT 193360 || Sbjct 23381 AT 23382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899482779677520