Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq1197 105 1e-17 >seq1197 Length=26491 Score = 105 bits (116), Expect = 1e-17 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || || | ||||| | |||||||| ||||| || || |||||||| | ||| Sbjct 22880 AATGCAGATTTTCGTGAAAACTCTCACTGGAAAGACTATCACTTTGGAAGTCGAGGCTTC 22821 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| | || ||| || || || || || || || ||||| || || ||||| || Sbjct 22820 TGACACCATCGAAAATGTCAAGGCCAAGATTCAGGACAAGGAAGGAATTCCACCAGACCA 22761 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||||||| | || | ||||| ||||||||||| ||| |||||| | || || || || Sbjct 22760 ACAAAGACTCATCTTCGCCGGAAAGCAGCTCGAGGATGGAAGAACTCTCTCCGACTACAA 22701 Query 156002 TAT 156004 ||| Sbjct 22700 TAT 22698 Score = 104 bits (114), Expect = 3e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || ||||||||||| || || || | |||||||||| || Sbjct 23382 ATGCAGATCTTTGTCAAGACTTTGACTGGAAAGACCATCACCCTCGAAGTCGAAGCCTCC 23323 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| |||||| || || || ||||| || ||||| || || ||||| ||| Sbjct 23322 GATACCATTGAAAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGATCAA 23263 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| | || | ||||| || || ||||| ||| |||||| | || || || ||| Sbjct 23262 CAGAGACTTATCTTCGCCGGAAAACAACTCGAGGATGGAAGAACTCTCTCCGACTACAAT 23203 Query 156003 AT 156004 || Sbjct 23202 AT 23201 Score = 102 bits (112), Expect = 1e-16 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| |||||||||||||| || || | || || || | |||| Sbjct 24343 ATGCAAATCTTCGTCAAAACGTTGACTGGAAAAACGATCACCCTGGAGGTGGAGGCTTCT 24284 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||||| || ||||| ||||| || || || || || ||||| || Sbjct 24283 GACACCATCGAGAACGTCAAGGCCAAAATCCAAGACAAGGAGGGAATCCCACCAGACCAG 24224 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||| | || | ||||| ||||||||||| ||| |||||| | || || || || Sbjct 24223 CAAAGACTCATCTTCGCCGGAAAGCAGCTCGAGGATGGAAGAACTCTTTCGGACTACAAC 24164 Query 156003 ATATCCAAAGAGGCGACGCTTCAT 156026 || || ||| |||| || ||| Sbjct 24163 ATCCAGAAGGAGTCGACTCTCCAT 24140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731732386267600