Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq1197 118 2e-21 >seq1197 Length=26491 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| || | |||||| | || || || | ||| | || || |||||| || || Sbjct 23153 ATACCTCCACGAAGACGGAGAACCAAGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCG 23212 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| | |||| || | |||||| || || ||||| | |||||||||||| ||| Sbjct 23213 GAGAGAGTTCTTCCATCCTCGAGTTGTTTTCCGGCGAAGATAAGTCTCTGTTGATCTGGT 23272 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| || ||||| || || || || || || | ||| || | ||| Sbjct 23273 GGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCAATGGTATCGGAGGCTTCG 23332 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || || ||||| || ||||| || || || | ||| |||||||| Sbjct 23333 ACTTCGAGGGTGATGGTCTTTCCAGTCAAAGTCTTGACAAAGATCTGCAT 23382 Score = 84.2 bits (92), Expect = 4e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453 |||||||||||||| || | ||| ||||| ||||| |||||||| || ||||| || || Sbjct 21993 TTACCAGCAAAGATCAAACGCTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTG 22052 Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513 || || || || | ||| || | ||| ||||| || || ||||| || ||||| Sbjct 22053 GCCTTGACGTTCTCGATGGTATCGGAGGCTTCGACTTCGAGGGTGATGGTCTTTCCAGTC 22112 Query 192514 AATGTTTTAATAAATATCTGCATT 192537 || || || | || || |||||| Sbjct 22113 AAAGTCTTGACGAAGATTTGCATT 22136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984287503087350