Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq1197 93.3 8e-14 >seq1197 Length=26491 Score = 93.3 bits (102), Expect = 8e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986 ||||| || || || | |||||| || || ||||| |||||||| ||||| || || || Sbjct 23743 TTACCGGCGAAGATGAGTCTCTGCTGATCTGGTGGAATTCCTTCCTTATCCTGGATCTTG 23802 Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046 || || || ||||||||||| | ||| ||||| || || ||||| || ||||| Sbjct 23803 GCCTTCACGTTCTCAATAGTATCTGAAGCTTCGACTTCGAGTGTGATGGTCTTTCCAGTG 23862 Query 172047 AATGTTTTAATGAATATCTGCATT 172070 | ||||| | ||| ||||||||| Sbjct 23863 AGGGTTTTCACGAAGATCTGCATT 23886 Score = 84.2 bits (92), Expect = 4e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986 ||||||||||| || || | ||| || || ||||| |||||||| || ||||| || || Sbjct 21993 TTACCAGCAAAGATCAAACGCTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTG 22052 Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046 || || || || ||||| || | ||| ||||| || || ||||| || ||||| Sbjct 22053 GCCTTGACGTTCTCGATGGTATCGGAGGCTTCGACTTCGAGGGTGATGGTCTTTCCAGTC 22112 Query 172047 AATGTTTTAATGAATATCTGCATT 172070 || || || | ||| || |||||| Sbjct 22113 AAAGTCTTGACGAAGATTTGCATT 22136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904963333993800