Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_021302.1 Length=47109 Score E Sequences producing significant alignments: (Bits) Value seq6320 80.6 8e-11 >seq6320 Length=4127 Score = 80.6 bits (88), Expect = 8e-11 Identities = 135/193 (70%), Gaps = 3/193 (2%) Strand=Plus/Plus Query 2250 CGCATGTGCCGCGAGGAGGCGCGCATCGCGTCGGTGCTGCGGGCGATCGGGCTGCCGATC 2309 || ||| ||||||| || ||| | ||||||||| || ||| || || |||||| Sbjct 3938 CGGATGCGCCGCGAAGATCCGCAGGTTAAGTCGGTGCTCCGCGCGGTCCCCCTCCCGATC 3997 Query 2310 CGCCGCACCGACTGGCGGATCCGCCCGAACGGCGCCCGCCCCGAGGTGGTCGAGCACGTC 2369 || ||||| ||| |||| | || ||| |||||||||||| |||| ||| || Sbjct 3998 ATGCGTACCGAGTGGGCGATCGACGGGACCGGATGCCGCCCCGAGGTAGTCGCACACATC 4057 Query 2370 GCCGCCTGCCTCGGTCTGCCGGTCGAGGGCGATGAATCCGACAAGCCGACGCCGCGCACC 2429 || ||| ||| || |||||| || |||| | | ||||| | || ||| |||||| Sbjct 4058 GCGGCCGACCTGGGACTGCCGATCAAGGGTCA-GCCGCCGAC--GGCGCCGCTGCGCACG 4114 Query 2430 CGGGGCCGGTTCT 2442 ||||||||||| Sbjct 4115 AAGGGCCGGTTCT 4127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150599902679822