Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq253 86.0 2e-11 >seq253 Length=65330 Score = 86.0 bits (94), Expect = 2e-11 Identities = 119/164 (73%), Gaps = 2/164 (1%) Strand=Plus/Minus Query 251405 CGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCC 251464 |||| |||||||| || || ||||||| ||| || | || || | || | || | Sbjct 31652 CGATCAGACCACAATTGTTGCACACATAGACATGATACGGGTCGGAAACTTCGAAAAGAC 31593 Query 251465 GACCCTTGGTG-AAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCG 251523 | | || || | || ||| || ||||| ||||| |||||||||||||||||| || Sbjct 31592 G-CTCTCGGAGGAATTGAGTAGCTCCGTGAGAAATTTGACAATCACGCTCCATTTCTCCA 31534 Query 251524 AAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACG 251567 |||||||||||||| || ||||| || || || ||| ||||| Sbjct 31533 AAACGAAGACCACCGTCACGAGCTCTTCCTTCCATAGGTTGACG 31490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471529813204957