Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq433 143 3e-28 seq3328 102 1e-15 seq1272 96.9 4e-14 seq89 95.1 1e-13 seq11978 91.5 2e-12 >seq433 Length=49269 Score = 143 bits (158), Expect = 3e-28 Identities = 218/305 (71%), Gaps = 4/305 (1%) Strand=Plus/Plus Query 868699 GTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCAT 868758 ||||||| |||||| |||||| ||||||||||| || |||| ||||| |||||| Sbjct 29755 GTACTCGGAGACGCGCTTCTCGAAGAAGTTGGTCTTTCCATCGATAGAGATGTTCTCCAT 29814 Query 868759 CCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCG 868818 | ||| ||||| | ||||| ||| |||||||| | | || ||||| | Sbjct 29815 GAAGTCGAAGGGGTTCTTCACTTTGTACAACTTCTCGCATCCCAACTCGGCAAGCAGATG 29874 Query 868819 GTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCAC 868878 |||||||||||||| ||||||||| |||| |||| |||||| ||||| | | || Sbjct 29875 ATCGGCGACAAACTCAATGTACTGGGACATCAGGCGACAGTTCATTCCGATCATGTCGAC 29934 Query 868879 CGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACG-ATGATCTGCC 868937 || || | |||| | | ||||||| ||| || ||||||| || ||| ||||||| | Sbjct 29935 TGGAAGAGCCTCGGTAAGGAACTCTTGCTCAATGGCGACGGCATC-ACGAATGATCT-CG 29992 Query 868938 TGGGCACG-TCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAGGCAAAGTCG 868996 | | || || | | ||||||| |||||||| |||||| |||||||| ||||| Sbjct 29993 TAGATGCGCTCTTGAGTGAGCTTGTTTTGGAGCATCGAGTAGAGGAGGCAGGCGAAGTCA 30052 Query 868997 CAGTG 869001 | ||| Sbjct 30053 CGGTG 30057 >seq3328 Length=10910 Score = 102 bits (112), Expect = 1e-15 Identities = 133/184 (72%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 1254365 GATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTG 1254424 ||||| || ||||| || || || ||||| | ||| || | |||||| |||| Sbjct 10898 GATCAAACGGACGGCCGTTTGAATTTCGCGGGATGAGATGGTCGATCTCTTGTTGTAGTG 10839 Query 1254425 CGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCAT 1254484 || ||||| ||||||| | ||||||| |||| | ||| ||||| ||||||||||| Sbjct 10838 AGCAAGACGAGATGCCTCGGCGGCGATGCGCTCGAAGACGTCATTGACGAACGAGTTCAT 10779 Query 1254485 GACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1254544 || |||||| | |||| |||| || ||| || || |||||||||||||| ||| Sbjct 10778 GATCGACATGGCCTTGGAAGAGACTCCAGTGTCTGGATGGACCTGCTTGAGCACACGGTA 10719 Query 1254545 GATG 1254548 |||| Sbjct 10718 GATG 10715 >seq1272 Length=25558 Score = 96.9 bits (106), Expect = 4e-14 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || || | | ||||| || ||||| || || || ||||| | | || Sbjct 107 GCTTGGCGAGCTCTCCTGGAAGGATCAAACGGACGGCCGTTTGAATTTCGCGGGAGGAGA 166 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || | |||||| |||| || ||||| ||||| | | ||||||| |||| | Sbjct 167 TGGTCGATCTCTTGTTGTAGTGAGCAAGACGAGATGCCTCAGCGGCGATGCGCTCGAAGA 226 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 || ||||| || |||||||||| |||||| | |||| |||| || ||| || | Sbjct 227 CATCATTGACGAAGGAGTTCATGATCGACATGGCCTTGGAAGAGACTCCAGTGTCTGGAT 286 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | |||||||||||||| ||||||| Sbjct 287 GAACCTGCTTGAGCACACGGTAGATG 312 >seq89 Length=103095 Score = 95.1 bits (104), Expect = 1e-13 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || ||||||||| | ||||||||| || |||||| | |||||| |||| |||||| Sbjct 61403 GCAGCCAACTACTTGGACATCAAGGGACTTCTCGATGTCACCTGCAAGACTGTCGCCAAC 61344 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300 ||||||||||| ||||| || || ||||| ||| || || ||||||||| ||| Sbjct 61343 ATGATCAAGGGAAAGTCTCCAGAAGAGATTCGCCGTACTTTCAACATCAAGAACG 61289 >seq11978 Length=497 Score = 91.5 bits (100), Expect = 2e-12 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 868717 CTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGG 868776 |||||| ||||||||||| || |||| ||||| |||||| | ||| ||||| Sbjct 260 CTCGAAGAAGTTGGTCTTTCCATCGATAGAGATGTTCTCCATGAAGTCGAAGGGGTTCTT 319 Query 868777 CGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGGTCGGCGACAAACTCGAT 868836 | ||||| ||| |||||||| | | ||||||| | |||||||||||||| || Sbjct 320 CACTTTGTACAACTTCTCGCATCCCAACTCGGCGAGCAAATGATCGGCGACAAACTCAAT 379 Query 868837 GTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCACCGGCAGCGACTCGCTCAC 868896 ||||||| |||| | || ||| || ||||| | | || || || | |||| | | Sbjct 380 GTACTGGGACATCATGCGACAGTTTATTCCGATTATGTCTACTGGAAGAGCCTCGGTGAG 439 Query 868897 AAACTCTTTCTCGATCTCGACGGCCTCGACGATGATCT 868934 ||||||| || || |||| || || ||| |||| Sbjct 440 GAACTCTTGTTCAATGGCGACAGCATCACGGATAATCT 477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6105886810872737