Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1197 134 1e-26 seq126 98.7 9e-16 >seq1197 Length=26491 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | || || || || || || |||||||| |||||| || Sbjct 23382 ATGCAGATCTTTGTCAAGACTTTGACTGGAAAGACCATCACCCTCGAAGTCGAAGCCTCC 23323 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || || |||||||||||||| |||||||| || || |||||| Sbjct 23322 GATACCATTGAAAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGATCAA 23263 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | ||||| ||||| ||||| || |||||| |||| | || || || || Sbjct 23262 CAGAGACTTATCTTCGCCGGAAAACAACTCGAGGATGGAAGAACTCTCTCCGACTACAAT 23203 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || |||||||| || || |||||||| | || | || ||||| Sbjct 23202 ATCCAGAAGGAATCCACTCTTCACTTGGTTCTCCGTCTTCGTGGAGG 23156 Score = 127 bits (140), Expect = 2e-24 Identities = 152/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || || ||||| || |||||| | Sbjct 21854 ATGCAGATCTTCGTCAAGACTCTCACCGGAAAGACCATCACCCTCGAGGTTGAAGCCTCT 21795 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || |||| || | ||| ||||||||||| |||||||| || || ||||| Sbjct 21794 GATACCATCGAGAACGTCAAGGCTAAA-ATCCAAGACAAGGAAGGAATCCCACCAGATCA 21736 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||||||||||| || || || ||||| ||||| | | | |||| || || || Sbjct 21735 GCAGCGTTTGATCTTCGCTGGAAAGCAGCTCGAGGACGGACGCACCTTGTCCGACTACAA 21676 Query 24883 CATTCAAAAGGAATCGACACTACA 24906 ||| |||||||| ||||| || || Sbjct 21675 CATCCAAAAGGAGTCGACCCTTCA 21652 Score = 123 bits (136), Expect = 2e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || |||||||| ||||| || Sbjct 23610 ATGCAGATCTTCGTCAAGACCCTCACTGGAAAGACCATCACCCTCGAAGTCGAAGCTTCC 23551 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||||||||| |||||||| || || ||||| Sbjct 23550 GATACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGATCAG 23491 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | | ||||| ||||| || ||||| |||||| | | | |||| ||||| ||| Sbjct 23490 CAAAGACTCATCTTCGCCGGAAAGCAGCTTGAGGATGGACGCACCTTGTCTGATTACAAC 23431 Query 24884 ATTCAAAAGGAATCGACACTACA 24906 || || ||||| ||||| || || Sbjct 23430 ATCCAGAAGGAGTCGACTCTCCA 23408 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || || || || || |||||| | Sbjct 22363 ATGCAGATCTTCGTGAAGACCCTCACCGGAAAGACCATCACTCTTGAGGTTGAAGCCTCT 22304 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| |||||||| || || ||||| Sbjct 22303 GACACCATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCACCAGATCAG 22244 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | ||||| ||||| || ||||| |||||| | | | | || || || ||| Sbjct 22243 CAGAGACTCATCTTCGCCGGAAAGCAGCTCGAGGATGGACGTACCCTCTCCGACTACAAC 22184 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || |||||||| || || || |||||||| Sbjct 22183 ATCCAAAAGGAGTCCACCCTTCACTTGGT 22155 Score = 100 bits (110), Expect = 3e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | |||||| | || || ||||| || || || || || || || | Sbjct 24343 ATGCAAATCTTCGTCAAAACGTTGACTGGAAAAACGATCACCCTGGAGGTGGAGGCTTCT 24284 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| || | ||| ||||||||||| || ||||| || || || || Sbjct 24283 GACACCATCGAGAACGTCAAGGCCAAA-ATCCAAGACAAGGAGGGAATCCCACCAGACCA 24225 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | | ||||| ||||| || ||||| |||||| |||| | || || || || Sbjct 24224 GCAAAGACTCATCTTCGCCGGAAAGCAGCTCGAGGATGGAAGAACTCTTTCGGACTACAA 24165 Query 24883 CATTCAAAAGGAATCGACACTACA 24906 ||| || ||||| ||||| || || Sbjct 24164 CATCCAGAAGGAGTCGACTCTCCA 24141 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || | || || || || || || |||||||| |||||| || Sbjct 22135 ATGCAAATCTTCGTCAAGACTTTGACTGGAAAGACCATCACCCTCGAAGTCGAAGCCTCC 22076 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||||||||| |||||||| || || ||||| Sbjct 22075 GATACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGATCAG 22016 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 || |||||||||||||| || || Sbjct 22015 CAGCGTTTGATCTTTGCTGGTAA 21993 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | || || || ||||| || ||||| || |||||| | Sbjct 23154 ATGCAGATCTTCGTCAAGACTTTGACTGGAAAGACTATCACCCTCGAGGTCGAAGCCTCT 23095 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| |||||||| || || ||||| Sbjct 23094 GACACCATCGAGAACGTGAAGGCCAAGATCCAAGACAAGGAAGGAATTCCCCCAGATCAG 23035 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 || || |||||||| ||||| || Sbjct 23034 CAGCGCTTGATCTTCGCCGGTAA 23012 >seq126 Length=90294 Score = 98.7 bits (108), Expect = 9e-16 Identities = 376/578 (65%), Gaps = 27/578 (5%) Strand=Plus/Plus Query 139369 GGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATC 139428 || ||||| | |||||| | || | || ||| ||| ||||||| ||||| |||||| Sbjct 11127 GGGCACATCAACGACCAATCCTGGTCCTTCTCGACACGCTTCATGAAAAGATCTGGAATC 11186 Query 139429 CACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTC--A 139486 || | ||| | | || ||| || || || ||||| | || |||| || | | Sbjct 11187 CAGAGAGCCAGGAACAGATCACGAGCACGCTCCTCTTCTGGTCCGGTGTTC--TTGCGAA 11244 Query 139487 TGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTT 139546 | || ||| || ||||| || ||||||||||| || || || ||||| | || ||| Sbjct 11245 GGGAAACGAACTCGAAAACATCGGCGTGCCATGGCTCGAGGTAAATGGCGAAGGCTCCTG 11304 Query 139547 TCCG---TTTGCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCG 139603 || ||||| ||||||||||| | || | | || ||| | || || | ||||| Sbjct 11305 GGCGCTTGTTGCCTCCTTGATCGACATAACGGGCGGTGTTGTTGTAAACACGAAGCATCG 11364 Query 139604 GCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATGG--GACTGTTGCGAGCTCGGAC 139661 | || || | | |||||||||||| | | ||||| || | | | || |||| Sbjct 11365 GTATGAGTCCATTGGATGTTCCGTTGGTTCCAGCGATGGTCGA-TCCAGTG-GCACGGAT 11422 Query 139662 GTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATCGCGT-A 139720 | ||| || |||| |||||||| ||| || || || || | ||| || || | | Sbjct 11423 CTTATGCACGTTGAGTCCGATTCCACCGGCACTCTTAGAGATAAGGGCGC-ATTGCTTCA 11481 Query 139721 ATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAA 139780 || ||||| || || || || || ||| || | || ||||| || || | Sbjct 11482 GAGTGTCGTAGATTCCGAGAATCGAATCCTCGCTCATTGTCAACAAGAAGCAGGAAGACA 11541 Query 139781 GTTG----CGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATT 139836 || ||| || ||| | | || || |||||||| || || || ||| Sbjct 11542 TCTGTGGACGGCAGGTTCCAG--AGTTG--AAAAGAGTAGGCGAAGCATGGGT---CATG 11594 Query 139837 T---GTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATA 139893 | | | ||||||| | |||||| ||||||||| | || || |||||||||| Sbjct 11595 TAGCGCTCAGACATCAGATTGTACGTCTCGATGGCGGCCTGGATGTCGTTTCCGTGGATT 11654 Query 139894 CCGACAGAGACTCGCATCAGCATATGTTGGATCCGTTC 139931 |||| | ||| ||||||||||| ||||| |||||| Sbjct 11655 CCGATGGCGACGCGCATCAGCATCTGTTGTGGCCGTTC 11692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449811776409080