Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq754 107 2e-18 >seq754 Length=35677 Score = 107 bits (118), Expect = 2e-18 Identities = 254/394 (64%), Gaps = 51/394 (13%) Strand=Plus/Minus Query 34291 ATGTTCTTTTTAGCGGACACGATGAGCTCAGTCTCCGGGTTGTCACATTCCGGACACAAC 34350 ||||| || || |||||| || |||| |||||||| || ||||| | ||||| Sbjct 33396 ATGTTGTTCTT-GCGGAC--GAACAGCTGGGTCTCCGGATTCTCACACGACTTGCACAAG 33340 Query 34351 ACAAACTTGCGGATGAAACCATCAAGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCG 34410 || ||||| |||||| ||||| || | |||||| | ||| | || || ||| Sbjct 33339 ACGAACTTCTTGATGAAGCCATCGAGAATGTCCTGAAGCTTGTTCGCATCATGCTCTCCG 33280 Query 34411 TTGACGATGAATCGTTCGTTTTTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCG 34470 ||||||||| | || ||||| ||| ||||| | |||||| || || |||||||| || Sbjct 33279 TTGACGATGTAACGCTCGTTCTTGACATCGAAATTCGTTTGGGCACCGAGCTCGCAACCA 33220 Query 34471 AAGTACTTTGTCGGGT-------AAATG-------------------------------- 34491 || ||||| || |||| ||||| Sbjct 33219 AAATACTTCGTTGGGTCTGAAAAAAATGCTGTTCATTTTCGTCTTCCCCAGTCGCTGAAC 33160 Query 34492 ---------GCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTC 34542 | ||| || | || ||||| ||||| || | |||||| |||||| ||| Sbjct 33159 ATACACATTGGCGGGCGCTCGAGAGCCTTCGCGATATCAGCCATGTTCGAGATGACGGTC 33100 Query 34543 TTGATGCCGTTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAG 34602 ||||| ||||||||||| |||||||| || || ||| ||||| |||||||||||| Sbjct 33099 TTGATTCCGTTGCCCTTGCCTTCGACTTTCGCCGAGAGCTTTGGCATCTTGTAGCGGTAG 33040 Query 34603 AACGCGTCCGCCACATTGCGGTTAACGTTCACAG 34636 |||| || || || ||||| ||||| |||| Sbjct 33039 AACGGATCAGCGACGGCACGGTTCACGTTGACAG 33006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412764814171673