Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1272 140 5e-27 seq3187 131 3e-24 seq30 129 9e-24 seq433 127 3e-23 seq3328 89.7 8e-12 >seq1272 Length=25558 Score = 140 bits (154), Expect = 5e-27 Identities = 172/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| |||||||||||| |||| || || || | | Sbjct 68 TGTACTTGGTGACAGCCTTGGTTCCCTCAGAGACGGCGTGCTTGGCGAGCTCTCCTGGAA 127 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||||| || ||||| || || || ||||||| | ||| || | |||||| | Sbjct 128 GGATCAAACGGACGGCCGTTTGAATTTCGCGGGAGGAGATGGTCGATCTCTTGTTGTAGT 187 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || || ||||| | | ||||||| |||| | || ||||| || ||||||| Sbjct 188 GAGCAAGACGAGATGCCTCAGCGGCGATGCGCTCGAAGACATCATTGACGAAGGAGTTCA 247 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||||||||| | ||| |||| || ||| || || |||||||||||||| Sbjct 248 TGATCGACATGGCCTTGGAAGAGACTCCAGTGTCTGGATGAACCTGCTTGAGCAC 302 >seq3187 Length=11549 Score = 131 bits (144), Expect = 3e-24 Identities = 150/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531 |||||||| || |||||||| ||||| || ||||||||| |||||| || || | | | Sbjct 10938 TACTTGGTCACAGCCTTGGTTCCCTCAGAAACGGCGTGCTTGGCCAACTCTCCTGGAAGG 10997 Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGC 1485591 |||| || ||||| || ||||| ||||||| ||| ||| ||| ||||| | | Sbjct 10998 ATCAAACGGACGGCCGTTTGGATTTCGCGGGAAGAGATGGTGGAGCGTTTGTTGTAGTGA 11057 Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 || || || |||||| | | ||||||| |||| | ||||||||| || ||||||||| Sbjct 11058 GCAAGACGAGAGGCCTCAGCGGCGATGCGCTCGAAGACGTCGTTGACGAAGGAGTTCATG 11117 Query 1485652 ATCGACATCGATTTGTTGGAGA 1485673 || ||||| | ||| ||||| Sbjct 11118 ATAGACATGGCCTTGGAGGAGA 11139 >seq30 Length=152714 Score = 129 bits (142), Expect = 9e-24 Identities = 146/196 (74%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||||||||| |||||||| ||| |||| || || || | | Sbjct 69235 TGTACTTGGTGACAGCCTTGGTACCCTCAGAGACGGCATGCTTGGCGAGCTCTCCTGGAA 69176 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||| || || |||||||||||||| || || | ||| ||| ||| ||||| | Sbjct 69175 GGATGAGACGAACGGCGGTCTGGATTTCACGAGATGAGATAGTGGAGCGTTTGTTGTAGT 69116 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||| || || |||| | |||| || |||| | |||||| || || || |||| Sbjct 69115 GAGCCAGACGAGATGCTTCGGAGGCGATACGCTCGAAGACGTCGTTCACGAATGAATTCA 69056 Query 1485650 TGATCGACATCGATTT 1485665 |||| ||||| | ||| Sbjct 69055 TGATGGACATTGCTTT 69040 >seq433 Length=49269 Score = 127 bits (140), Expect = 3e-23 Identities = 233/333 (70%), Gaps = 14/333 (4%) Strand=Plus/Plus Query 793891 TGACGCCCG--CCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTC 793948 |||| |||| | |||| |||||| |||||| |||||| ||||||||||| || || Sbjct 29739 TGACACCCGGACGTTGG--TACTCGGAGACGCGCTTCTCGAAGAAGTTGGTCTTTCCATC 29796 Query 793949 GAGCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGC---TTCTCGCA 794005 || ||||| |||||| | ||| ||||| | ||| | || | |||||||| Sbjct 29797 GATAGAGATGTTCTCCATGAAGTCGAAGGGGTT---CTTCACTTTGTACAACTTCTCGCA 29853 Query 794006 CCCGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGC 794065 || | | |||||||| | |||||||| || |||||||||||| |||| | |||| | Sbjct 29854 TCCCAACTCGGCAAGCAGATGATCGGCGACAAACTCAATGTACTGGGACATCA-GGCGAC 29912 Query 794066 -GTTCATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGA 794124 |||||| ||||| | | || || || | |||| | | ||||||| ||| || ||| Sbjct 29913 AGTTCATTCCGATCATGTCGACTGGAAGAGCCTCGGTAAGGAACTCTTGCTCAATGGCGA 29972 Query 794125 CGGCCTCGATGATGATCTGCCTGGGCACG-TCGGACGACGGCTTGTCGACGAGCATCGTG 794183 |||| || ||||||| | | | || || | |||||| |||||||| | Sbjct 29973 CGGCATCACGAATGATCT-CGTAGATGCGCTCTTGAGTGAGCTTGTTTTGGAGCATCGAG 30031 Query 794184 TAGAGCAGGCAGGCAAAGTCGCAATGCAGACCT 794216 ||||| |||||||| ||||| | || |||||| Sbjct 30032 TAGAGGAGGCAGGCGAAGTCACGGTGAAGACCT 30064 >seq3328 Length=10910 Score = 89.7 bits (98), Expect = 8e-12 Identities = 124/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCG 1485590 ||||| || ||||| || || || ||||||| ||| || | |||||| | | Sbjct 10898 GATCAAACGGACGGCCGTTTGAATTTCGCGGGATGAGATGGTCGATCTCTTGTTGTAGTG 10839 Query 1485591 CGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCAT 1485650 || || || ||||||| | ||||||| |||| | ||| ||||| ||||||||||| Sbjct 10838 AGCAAGACGAGATGCCTCGGCGGCGATGCGCTCGAAGACGTCATTGACGAACGAGTTCAT 10779 Query 1485651 GATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 ||||||||| | ||| |||| || ||| || || |||||||||||||| Sbjct 10778 GATCGACATGGCCTTGGAAGAGACTCCAGTGTCTGGATGGACCTGCTTGAGCAC 10725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7914623017824579