Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq1197 143 2e-29 seq1737 132 3e-26 >seq1197 Length=26491 Score = 143 bits (158), Expect = 2e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||| || | | || |||| ||||| |||| |||||| || ||||| ||||| | Sbjct 22135 TTCCTCCTCTGAGGCGGAGAACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCGG 22194 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | ||| | || |||| || || ||||||||||||||||| |||| ||||| ||| | | Sbjct 22195 AGAGGGTACGTCCATCCTCGAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTG 22254 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | || |||||||| | || || |||||| | || | ||| ||| || | Sbjct 22255 GAATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCAGAGGCTTCAA 22314 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | |||| || ||||||||||| ||||||||||| || ||||||||||| Sbjct 22315 CCTCAAGAGTGATGGTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCAT 22363 Score = 125 bits (138), Expect = 5e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| ||||| || || || | | |||| |||| || || |||||||||||||| Sbjct 23419 CTCCTTCTGGATGTTGTAATCAGACAAGGTGCGTCCATCCTCAAGCTGCTTTCCGGCGAA 23478 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| |||| |||||| ||| | || | || |||||||| | || || |||||| Sbjct 23479 GATGAGTCTTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTT 23538 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | || | || || ||||| || | ||| ||||||||||| ||||||||||| || Sbjct 23539 CTCGATGGTATCGGAAGCTTCGACTTCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTGAC 23598 Query 34966 AAAGATCTGCAT 34977 ||||||||||| Sbjct 23599 GAAGATCTGCAT 23610 Score = 122 bits (134), Expect = 6e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || || |||| ||| |||||| || ||||| ||||| || | | |||| | || Sbjct 21643 AGAACGAGATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGTCCGTCC 21702 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || |||||||| |||||||||| || ||||| ||| | || | || |||||||| Sbjct 21703 TCGAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGTGGGATTCCTTCCTTGTCT 21762 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | ||||| |||||| | || | ||| ||| || || || | ||| |||||| Sbjct 21763 TGGATTTTAGCCTTGACGTTCTCGATGGTATCAGAGGCTTCAACCTCGAGGGTGATGGTC 21822 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| ||||| ||||| || ||||||||||| Sbjct 21823 TTTCCGGTGAGAGTCTTGACGAAGATCTGCAT 21854 Score = 118 bits (130), Expect = 7e-22 Identities = 143/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| ||||| |||||||| || | | |||| || || |||||||||||||| Sbjct 24152 CTCCTTCTGGATGTTGTAGTCCGAAAGAGTTCTTCCATCCTCGAGCTGCTTTCCGGCGAA 24211 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| |||| |||||||||| | || | ||||||||||| | ||||| |||||| Sbjct 24212 GATGAGTCTTTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGGATTTTGGCCTTGACGTT 24271 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | || | ||| ||||| || || | ||| || || ||||| || | || || || Sbjct 24272 CTCGATGGTGTCAGAAGCCTCCACCTCCAGGGTGATCGTTTTTCCAGTCAACGTTTTGAC 24331 Query 34966 AAAGATCTGCATGAT 34980 ||||| |||||||| Sbjct 24332 GAAGATTTGCATGAT 24346 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||||| ||| |||||||| || || ||||| || || | | |||| Sbjct 23171 AGAACCAAGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGAGAGAGTTCTTCCATCC 23230 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||| |||||||||||||| |||| || || ||| | || | || |||||||| Sbjct 23231 TCGAGTTGTTTTCCGGCGAAGATAAGTCTCTGTTGATCTGGTGGGATTCCTTCCTTGTCT 23290 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | | || | || ||| ||||| || | ||| |||||| Sbjct 23291 TGGATCTTGGCCTTGACGTTTTCAATGGTATCGGAGGCTTCGACTTCGAGGGTGATGGTC 23350 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || | ||||| |||||||||||||| Sbjct 23351 TTTCCAGTCAAAGTCTTGACAAAGATCTGCAT 23382 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | ||| |||||||| || || ||||| || || | | |||| Sbjct 22668 AGCACCAAGTGGAGAGTGGATTCCTTCTGGATATTGTAGTCGGAGAGAGTTCTTCCATCC 22727 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||||||||||||||| |||| ||| |||||| | || | || |||||||| Sbjct 22728 TCGAGCTGCTTTCCGGCGAAGATGAGTCTTTGTTGGTCTGGTGGAATTCCTTCCTTGTCC 22787 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || ||||| | | || | ||| |||||||| || | || || ||| Sbjct 22788 TGAATCTTGGCCTTGACATTTTCGATGGTGTCAGAAGCCTCGACTTCCAAAGTGATAGTC 22847 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| ||||| || || || || |||||||| Sbjct 22848 TTTCCAGTGAGAGTTTTCACGAAAATCTGCAT 22879 >seq1737 Length=20200 Score = 132 bits (146), Expect = 3e-26 Identities = 174/239 (73%), Gaps = 4/239 (2%) Strand=Plus/Plus Query 34743 AATCATTTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTAT 34802 |||| || ||||| | | | || |||| ||||| |||| ||||||||| ||||| | Sbjct 9774 AATCCTTACCTCCACGAAGACGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGT 9833 Query 34803 AGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGT 34862 |||| || || | || |||| || |||||||||||||||||||||| |||||||| | Sbjct 9834 AGTCGGAGAGAGTACGTCCATCCTCAAGTTGCTTTCCGGCGAAGATCAAGCGTTGCTGAT 9893 Query 34863 CTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATT 34920 || | || | || |||||||| | || || ||||| || || || | || Sbjct 9894 CTGGTGGAATTCCTTCCTTGTCCTGGATCTTAGCCTTGAC--ATTCTCGATGGTATCGGA 9951 Query 34921 GGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGA 34979 |||||||| || | ||| || ||||| ||||| || ||||| || ||||| ||||||| Sbjct 9952 AGCCTCGACCTCGAGGGTAATCGTCTTACCCGTCAGAGTCTTGACGAAGATTTGCATGA 10010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325632223276559