Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq1197 98.7 8e-16 >seq1197 Length=26491 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | | ||| || ||||| ||||| |||||||| || || || || || || | Sbjct 23156 CCTCCACGAAGACGGAGAACCAAGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGAG 23215 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | ||| ||||||||||| || || | || | ||| || ||||| || || Sbjct 23216 AGAGTTCTTCCATCCTCGAGTTGTTTTCCGGCGAAGATAAGTCTCTGTTGATCTGGTGGG 23275 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || |||||||| | || ||||| |||| | || || || ||| ||| Sbjct 23276 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCAATGGTATCGGAGGCTTCGACT 23335 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || || ||||| || || || ||||| |||||||| Sbjct 23336 TCGAGGGTGATGGTCTTTCCAGTCAAAGTCTTGACAAAGATCTGCAT 23382 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| || | || || || | ||| || || || || || || ||||| ||||| | Sbjct 23384 CCTCCTCTGAGGCGAAGAACGAGATGGAGAGTCGACTCCTTCTGGATGTTGTAATCAGAC 23443 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || || || || || | || | |||||||||||| || || Sbjct 23444 AAGGTGCGTCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGTCTTTGCTGATCTGGTGGG 23503 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || |||||||| | || ||||| | || | || || ||| ||| ||| Sbjct 23504 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGAAGCTTCGACT 23563 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || || || || || || ||||| | ||| || || || ||||||||| Sbjct 23564 TCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTGACGAAGATCTGCATT 23611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385147551756801