Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_023575.1 Length=45550 Score E Sequences producing significant alignments: (Bits) Value seq9433 102 2e-17 >seq9433 Length=1355 Score = 102 bits (112), Expect = 2e-17 Identities = 200/290 (69%), Gaps = 12/290 (4%) Strand=Plus/Plus Query 39731 GTCGTGAACCAGTTGTTCTTCGAACTTCAATCGATCTTCCCGGCCTGGCGGCAGGCGTGG 39790 |||||||| | ||||| ||| || | || |||||||| |||||| |||||| ||| Sbjct 999 GTCGTGAATTCGCTGTTCAACGAGCTGAAGTCCATCTTCCCCGCCTGGAAGCAGGCCTGG 1058 Query 39791 CCA-ACCACGGAAGCGATTGCTAAG---GCAAAGCGTACTTGGATCAAGGCGTTCATGGA 39846 || | ||| | ||| | ||| || ||||| | |||||||||| | |||| Sbjct 1059 CCGGATGACG-AGGCGCTG---AAGCGCGCCAAGCGCTCCTGGATCAAGGGCCTGATGGC 1114 Query 39847 CGCAGGTCTGAACAGTCTGGAGCAGATCCGCTATGGCATTCAGCAATGCCGCGCATCTGG 39906 ||| || | || ||||| |||||||||| ||| | | ||||| || || Sbjct 1115 CGCCGGCATTCACTCGCTGGAACAGATCCGCTTCGGCCTGATGACCTGCCGGGCCAGCGG 1174 Query 39907 CGGCGACTTCGCGCCAAGCGTCGGCAAGTTCATCAAGTGGTGCAACCCGAGTCCTGAACA 39966 | |||||||| || ||||||||||||||| | |||||||| | || || | || || Sbjct 1175 CCAGGACTTCGCACCCAGCGTCGGCAAGTTCGTGGAGTGGTGCCAGCCCAGCGCCGAGCA 1234 Query 39967 TCTGGGGCTGCCCAGCGTA--GAGAAGGCCTATCTGGAGGCTGCCCGAAA 40014 || || ||||| || | |||||||||| | |||||| ||||| || Sbjct 1235 ACTCGGCCTGCC--GCCGACCGAGAAGGCCTTCCAGGAGGCCGCCCGCAA 1282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145612006771984