Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq8705 179 3e-39 seq350 122 7e-22 seq14010 91.5 1e-12 seq1879 89.7 4e-12 seq362 86.0 5e-11 >seq8705 Length=1774 Score = 179 bits (198), Expect = 3e-39 Identities = 299/430 (70%), Gaps = 4/430 (1%) Strand=Plus/Plus Query 281411 GTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACT 281470 ||||| ||||| | || | |||||| ||||| || || ||||| | || || |||||| Sbjct 367 GTTGACTTATCCTCAGCTGACACATTCAGAATTCCGTTTGCATCGATGTCGAAAGTGACT 426 Query 281471 TCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGA 281530 ||||| ||||| || || | ||||||||||||| || ||| | |||||||| ||| Sbjct 427 TCAATCTGAGGAACTCCACGTGGAGCAGGTGGGATTCCGCTCAATTCGAATGTTCCGAGA 486 Query 281531 TTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTT 281590 || ||||| ||| | ||||| || ||| | | ||| || | |||| | | | Sbjct 487 CGATGGTTATCACGAGTCATGGCACGTTCTCCTTCGTAGACTTGAATTGAAACTCCTGGT 546 Query 281591 TGATTATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTA 281650 ||||| || | ||| ||||| ||| | | ||| || |||||| ||||||| | Sbjct 547 TGATTGTCGGCATATGTTGTGAATGTTTTCGATGCCTTTGTTGGAATTCGAGTGTTTCGA 606 Query 281651 TCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACA 281710 ||||| | ||||||||| | |||||||||||| || | |||||| | |||| ||| Sbjct 607 TCAATCAGATTGGTCATCACACCACCAGCTGTCTCGATTCCAAGACTCAATGGAGCAACA 666 Query 281711 TCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGA--CCAACAAGAATAGCTGCTT 281768 ||||| || | || || || | | ||| ||| |||| || || | ||||||| Sbjct 667 TCAACGAGTAGAACATCTTTGATTGTTTGATC--CTTGACTCCGGACAGTACGGCTGCTT 724 Query 281769 GAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTAC 281828 ||| ||||| || ||||||| |||||||| ||||| | | || |||| || | Sbjct 725 GAACTGCAGCTCCGAATGCAACTGCTTCATCGGGATTGATTGAGCAGTTGAGTTCCTTTC 784 Query 281829 CATTGAAAAA 281838 | |||||||| Sbjct 785 CGTTGAAAAA 794 Score = 156 bits (172), Expect = 3e-32 Identities = 307/447 (69%), Gaps = 8/447 (2%) Strand=Plus/Plus Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 ||||| |||| |||||| |||||||||||||| || |||| | | || | |||||| Sbjct 1290 CCATAAGCAAGAGCAGCTGCAGTTGGTTCATTGATGATTCGAATGGCGTTCAATCCAGCA 1349 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 || | |||||||||| || |||||||| || ||||| || |||||||| |||||| Sbjct 1350 ATCGTGGCTGCATCTTTTGTTGCTTGTCTCTGACTGTCGTTGAAGTATGCAGGTACAGTA 1409 Query 282464 ATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTT 282523 || || ||||| | ||| | | ||| | || | ||| |||| ||||| || || Sbjct 1410 ATGACTGCATCCTTGACTGCATGTCCCAGGTATGTCTCTGCAGTTTCCTTCATCTT-CTG 1468 Query 282524 AA-AATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGATTC-ATTTTGATATGATA 282581 || | ||||| ||| |||| ||| ||| ||||| | ||| ||| || | | | Sbjct 1469 AAGTACCATTGCTGAGATTTCTTCCGGATTGAATTGCCTCTTTTCTCCTTTCATCTCA-A 1527 Query 282582 CTTCAAAATATGG--TTTATTACCAACATTAATAACTTTAAATGGCCAATATTTCATATC 282639 |||||| ||| || || | || | ||| ||||||||||| ||| || Sbjct 1528 CTTCAATCACTGGCTTTCCTTGTTTTCCTT--TCACTCCAAATGGCCAATGTTTGCAGTC 1585 Query 282640 TGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGT 282699 ||||||||| || |||| || ||| || || | || || ||||| || | || Sbjct 1586 TGATTGAACTGTTGCTTCATCGAACCGTCTGCCGATCAGTCTCTTCGCATCGAATACTGT 1645 Query 282700 ATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTC 282759 ||| |||||| || ||||||| ||| ||||||||||| | || ||||||| || Sbjct 1646 ATTCTCTGGATTTCGAGCTGCTTGATCTTTTGCTGCATCTCCGACCAATCGTTCTGTATC 1705 Query 282760 TGTAAATGAAACATATGATGGAGTTGT 282786 || || | |||||||| || ||||| Sbjct 1706 AGTGAAGGCGACATATGAAGGCGTTGT 1732 Score = 87.8 bits (96), Expect = 1e-11 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 86116 AAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCC 86175 || || || |||||||| ||||||||||||||||| || ||| || | | || || Sbjct 1287 AATCCATAAGCAAGAGCAGCTGCAGTTGGTTCATTGATGATTCGAATGGCGTTCAATCCA 1346 Query 86176 GCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACA 86235 ||||| | || | ||| |||||||||||||| ||| || || ||||| |||||| Sbjct 1347 GCAATCGTGGCTGCATCTTTTGTTGCTTGTCTCTGACTGTCGTTGAAGTATGCAGGTACA 1406 Query 86236 GTAATAACTGC 86246 ||||| ||||| Sbjct 1407 GTAATGACTGC 1417 >seq350 Length=55662 Score = 122 bits (134), Expect = 7e-22 Identities = 112/142 (79%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 282334 TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATT 282393 ||| || || ||||| || ||||||||||||||||| ||||| || ||||| | |||| Sbjct 36733 TTTGTCCAGTCCATAAGCCAAAGCAGCAGCAGTTGGCTCATTGATGATTCTGATGGCATT 36674 Query 282394 AAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 282453 || |||||||| | ||||||| || ||||||||||| || |||||| ||||| || Sbjct 36673 GAGTCCAGCAATGGTGGCTGCATCCTTTGTGGCTTGTCTCTGACTATCGTTGAAATAGGC 36614 Query 282454 AGGAACAGTAATAACGGCATCT 282475 ||| |||||||| || || ||| Sbjct 36613 AGGTACAGTAATCACAGCGTCT 36592 Score = 120 bits (132), Expect = 2e-21 Identities = 330/501 (66%), Gaps = 6/501 (1%) Strand=Plus/Minus Query 281308 ATCTGCTTCTTCAAATTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAA 281367 |||| | | ||| || ||||| || || | | |||||| || || | | ||| || || Sbjct 37816 ATCTTCCTTTTCGAACTCTTTCGCCTCGTTGACCATTCTATCGATATCAGCTTGCGACAA 37757 Query 281368 TCTTCCGCGATTATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGC 281427 | ||| | || | || || ||| || ||||| || |||||||| | || Sbjct 37756 ACGTCCTTTTTCGTTTTTGATCGTGATACGGTTCGATTTTCCAGTGGATTTATCCTCAGC 37697 Query 281428 AGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCC 281487 | |||||| ||||| ||||| ||||| | ||| || |||||||||||||| || || || Sbjct 37696 TGACACATTTAGAATTCCATTTGCATCGATATCGAAAGTGACTTCAATTTGGGGAACTCC 37637 Query 281488 TCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGT 281547 | |||| || ||||| || | | ||||| || ||| || || || ||| Sbjct 37636 ACGTGGAGCTGGCGGGATTCCGGAAAGTTCGAATGTACCAAGACGATGGTTGTCACGAGT 37577 Query 281548 GAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGT 281607 | | ||||| || || | | ||| || | ||| | | ||| || || ||||| || Sbjct 37576 CATTGCACGTTCTCCTTCATAGACTTGAATGGATACTCCTGGTTGGTTGTCGGAATACGT 37517 Query 281608 TGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCAT 281667 || || | |||| || ||||| || ||||| | ||| || || || ||||| Sbjct 37516 GGTGAAAGTTTTGGAGGCCTTCGTTGGAATCGTGGTGTTACGATCGATGATGTTTGTCAT 37457 Query 281668 AATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT- 281726 | ||| ||||||||||| | || ||| | |||| || ||||| || | | || Sbjct 37456 GACACCTCCAGCTGTTTCGATTCCGAGACTCAATGGAGCCACGTCAACGAGCAAGACATC 37397 Query 281727 TTTGAAGTTTTTCATCAGTTTGA--CCAACAAGAATAGCTGCTTGAATAGCAGCACCATA 281784 ||||| | | | ||| |||| || ||| | || ||||| | || |||||| | Sbjct 37396 TTTGATG-GTCTGATC--CTTGATTCCGGAAAGGACGGCAGCTTGGACCGCTGCACCAAA 37340 Query 281785 TGCAACAGCTTCATCAGGATT 281805 ||||| |||||||| ||||| Sbjct 37339 GGCAACGGCTTCATCTGGATT 37319 >seq14010 Length=264 Score = 91.5 bits (100), Expect = 1e-12 Identities = 166/243 (68%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 281860 CTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAG 281919 ||| |||| ||||| |||||||| || ||||||| ||||| | || ||||| || || Sbjct 255 CTTGGGAACACGAGTGGATCCTCCGACCAATACAACTTCATCAATCTTGGATTTGTCGAG 196 Query 281920 TTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGAACA 281979 ||| | ||| | | | |||||||| ||||||||| || || | || | ||| Sbjct 195 TTTCGCATCTCGAAGAGCCTTTTCAACTGGTTCAAGAGTCTTTCGGAAGAGATCAGCACA 136 Query 281980 AAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAACAAAGA 282039 |||||||||||| ||| | ||| | | | |||| ||||||||||| | ||| Sbjct 135 CAGTTCTTCGAATCGAGCACGAGTTATCTTTGAACACAAATCGATTCCTTCGAAAAGAGA 76 Query 282040 ATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGC 282099 ||| ||||| | || | || | ||| || |||| | || || |||||||| || Sbjct 75 ATCGACTTCGACGGTGGCTTCCGATGAACTTGAAAGTGTTCTCTTGGCTCGTTCACAGGC 16 Query 282100 TGT 282102 || Sbjct 15 GGT 13 >seq1879 Length=19138 Score = 89.7 bits (98), Expect = 4e-12 Identities = 192/287 (67%), Gaps = 0/287 (0%) Strand=Plus/Minus Query 282188 CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAA 282247 || || || || ||||| ||||| | | || | ||| | |||| | || | ||| Sbjct 18895 CGGTTGTCGAAGTCTTCTCCTCCAAGATGGGTGTCTCCGGCAGTAGACTTGACCTCGAAG 18836 Query 282248 AGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATA 282307 | ||| || |||| | | || | ||||| ||| ||||| || | ||| || || Sbjct 18835 ATTCCGTCCTCAATGGTAAGAATGGACACATCGAAGGTACCACCTCCAAGATCGAAGATG 18776 Query 282308 AGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTT 282367 || || || |||| || | || || |||||||| || || | ||| ||||||||| Sbjct 18775 AGAACGTTGCGTTCTCCGTGTCCCTTCTTGTCAAGACCGTAGGCGATAGCGGCAGCAGTT 18716 Query 282368 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 282427 || || || || || | | || || | |||| || ||| ||||| || ||||| Sbjct 18715 GGCTCGTTGATGATACGAAGGACGTTGACTCCAGAGATAGCTCCGGCATCCTTGGTGGCC 18656 Query 282428 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATC 282474 || | ||| || ||||| || || || || ||||| || |||||||| Sbjct 18655 TGACGTTGCGAGTCGTTGAAGTAAGCTGGGACAGTGATGACGGCATC 18609 >seq362 Length=55147 Score = 86.0 bits (94), Expect = 5e-11 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 131192 GCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATTCATTACGGAGCTCCC 131251 || ||||| ||||| ||| ||||||| ||||| | ||| |||||||| || ||| Sbjct 13128 GCCTTTGGAATGGGAATTGATAAACCAGATGTGCGGAATGTCATTCATTATGGTTGTCCG 13187 Query 131252 AAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGTGATGGAG 131303 || ||||||||| ||| ||||||||||| || ||||| || | ||||||| Sbjct 13188 AAAAATATTGAATCTTACTATCAAGAAATGGGAAGAGCCGGCAGAGATGGAG 13239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739881149392986