Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq1197 197 3e-45 seq1737 134 3e-26 >seq1197 Length=26491 Score = 197 bits (218), Expect = 3e-45 Identities = 181/229 (79%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | | ||| ||||| ||||| ||||| ||||| ||||| ||||| || || | Sbjct 23154 TACCTCCACGAAGACGGAGAACCAAGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGG 23213 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| |||| || || || ||||||||||| || ||||| ||||| ||||||||||| | Sbjct 23214 AGAGAGTTCTTCCATCCTCGAGTTGTTTTCCGGCGAAGATAAGTCTCTGTTGATCTGGTG 23273 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||||||||| ||||| ||||| || || || |||||||| ||||| | ||| | Sbjct 23274 GGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCAATGGTATCGGAGGCTTCGA 23333 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| | || || ||||| || ||||| ||||| ||||| |||||||| Sbjct 23334 CTTCGAGGGTGATGGTCTTTCCAGTCAAAGTCTTGACAAAGATCTGCAT 23382 Score = 176 bits (194), Expect = 9e-39 Identities = 177/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | | || || || ||||| ||||| ||||| ||||| ||||| || || | Sbjct 22651 TACCTCCACGAAGGCGGAGCACCAAGTGGAGAGTGGATTCCTTCTGGATATTGTAGTCGG 22710 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| |||| || || || || || ||||| || ||||| ||||||||||| ||||| | Sbjct 22711 AGAGAGTTCTTCCATCCTCGAGCTGCTTTCCGGCGAAGATGAGTCTTTGTTGGTCTGGTG 22770 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||||||||| || |||||||| || || |||||||| || || ||| || || | Sbjct 22771 GAATTCCTTCCTTGTCCTGAATCTTGGCCTTGACATTTTCGATGGTGTCAGAAGCCTCGA 22830 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||||||||| || ||||| || || | || || || || ||||||||| Sbjct 22831 CTTCCAAAGTGATAGTCTTTCCAGTGAGAGTTTTCACGAAAATCTGCATT 22880 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||||||||| | || ||||| | || ||||| || || ||||| || || ||||||| Sbjct 23382 TACCTCCTCTGAGGCGAAGAACGAGATGGAGAGTCGACTCCTTCTGGATGTTGTAATCAG 23441 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | || || || || || ||||| || ||||| |||||||| |||||||| | Sbjct 23442 ACAAGGTGCGTCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGTCTTTGCTGATCTGGTG 23501 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||||||||| ||||| ||||| || || || || || || ||||| || ||| | Sbjct 23502 GGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGAAGCTTCGA 23561 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||| | || || ||||| || || | ||||| || || ||||||||| Sbjct 23562 CTTCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTGACGAAGATCTGCATT 23611 Score = 136 bits (150), Expect = 8e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||| | || ||||| ||||| || || || || || || || || || || || Sbjct 22137 CCTCCTCTGAGGCGGAGAACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAG 22196 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || || || || || ||||| || ||||| ||||| || |||||||| || Sbjct 22197 AGGGTACGTCCATCCTCGAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGA 22256 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||||||||| ||||| ||||| || || || || ||||| || ||| | ||| || Sbjct 22257 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCAGAGGCTTCAACC 22316 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || | ||| || ||||| || || | ||||| || || ||||||||| Sbjct 22317 TCAAGAGTGATGGTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCATT 22364 Score = 104 bits (114), Expect = 5e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | ||| ||||| | || || || || || || || || || || || || Sbjct 21628 CCTCCACGAAGACGGAGAACGAGATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCGGAC 21687 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | ||||| || || || |||||||| ||||| | | || |||||||| || Sbjct 21688 AAGGTGCGTCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGTGGG 21747 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||||||||| ||||| || || || || || || || || |||||| | ||| || Sbjct 21748 ATTCCTTCCTTGTCTTGGATTTTAGCCTTGACGTTCTCGATGGTATCAGAGGCTTCAACC 21807 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || ||||| || || | ||||| || || |||||||| Sbjct 21808 TCGAGGGTGATGGTCTTTCCGGTGAGAGTCTTGACGAAGATCTGCAT 21854 Score = 102 bits (112), Expect = 2e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || || ||||| ||||| || |||||||| || |||||||||||||| || ||||| Sbjct 23743 TTACCGGCGAAGATGAGTCTCTGCTGATCTGGTGGAATTCCTTCCTTATCCTGGATCTTG 23802 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || || || ||||| ||||| || ||| ||||| | || || ||||| || || Sbjct 23803 GCCTTCACGTTCTCAATAGTATCTGAAGCTTCGACTTCGAGTGTGATGGTCTTTCCAGTG 23862 Query 82788 AACGTCTTTACAAATATCTGCATT 82811 | || || || || ||||||||| Sbjct 23863 AGGGTTTTCACGAAGATCTGCATT 23886 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| | | || |||||||| || ||||||||||| ||||| ||||| Sbjct 21993 TTACCAGCAAAGATCAAACGCTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTG 22052 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || || || || || ||||| | ||| ||||| | || || ||||| || ||| Sbjct 22053 GCCTTGACGTTCTCGATGGTATCGGAGGCTTCGACTTCGAGGGTGATGGTCTTTCCAGTC 22112 Query 82788 AACGTCTTTACAAATATCTGCATT 82811 || ||||| || || || |||||| Sbjct 22113 AAAGTCTTGACGAAGATTTGCATT 22136 Score = 91.5 bits (100), Expect = 3e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 82683 AGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCA 82742 ||||| ||||||||||| || |||||||||||||| |||||||| || || || || || Sbjct 22524 AGTCTCTGTTGATCTGGTGGGATTCCTTCCTTATCCTGAATCTTGGCCTTGACGTTCTCG 22583 Query 82743 ATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAAT 82802 || || || || ||| || || | || || ||||| || || | ||||| || || Sbjct 22584 ATGGTGTCGGAAGCTTCGACCTCGAGGGTGATAGTCTTTCCGGTGAGGGTCTTGACGAAG 22643 Query 82803 ATCTGCAT 82810 |||||||| Sbjct 22644 ATCTGCAT 22651 Score = 87.8 bits (96), Expect = 4e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || || ||||| | | || |||||||| || ||||||||||| ||||| ||||| Sbjct 23012 TTACCGGCGAAGATCAAGCGCTGCTGATCTGGGGGAATTCCTTCCTTGTCTTGGATCTTG 23071 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || || || || || || ||| | ||| || || | || || ||||| || ||| Sbjct 23072 GCCTTCACGTTCTCGATGGTGTCAGAGGCTTCGACCTCGAGGGTGATAGTCTTTCCAGTC 23131 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 || ||||| || || |||||||| Sbjct 23132 AAAGTCTTGACGAAGATCTGCAT 23154 >seq1737 Length=20200 Score = 134 bits (148), Expect = 3e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | | ||| ||||| ||||| || || || || ||||| || || || || | Sbjct 9780 TACCTCCACGAAGACGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 9839 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | || || || ||||| ||||| || ||||| | | ||| |||||||| | Sbjct 9840 AGAGAGTACGTCCATCCTCAAGTTGCTTTCCGGCGAAGATCAAGCGTTGCTGATCTGGTG 9899 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||||||||| || || ||||| || || ||||| || || ||||| || || | Sbjct 9900 GAATTCCTTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTATCGGAAGCCTCGA 9959 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || |||||||| || |||| ||||| || || || ||||| Sbjct 9960 CCTCGAGGGTAATCGTCTTACCCGTCAGAGTCTTGACGAAGATTTGCAT 10008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981635221793479