Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq1197 116 4e-21 seq1737 95.1 1e-14 seq126 86.0 6e-12 >seq1197 Length=26491 Score = 116 bits (128), Expect = 4e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | ||| ||||| || || || ||||| ||| || ||| |||||||||||| Sbjct 21651 ATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGTCCGTCCTCGAGCTG 21710 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 ||| || ||| | || | |||||||| || || ||||| ||||||||||| ||| || Sbjct 21711 CTTTCCAGCGAAGATCAAACGCTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATTTT 21770 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||||| | ||| | || || | || || || |||| ||||| ||| || ||||| Sbjct 21771 AGCCTTGACGTTCTCGATGGTATCAGAGGCTTCAACCTCGAGGGTGATGGTCTTTCCGGT 21830 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || ||||| |||||||| Sbjct 21831 GAGAGTCTTGACGAAGATCTGCAT 21854 Score = 109 bits (120), Expect = 5e-19 Identities = 150/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||||||||| || || || ||||| ||| | || | | | |||||||| Sbjct 22158 AAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAGAGGGTACGTCCA-TCCTCGAG 22216 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || ||| | ||||| | |||||| || || || || ||||||||||| ||| Sbjct 22217 CTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGGAT 22276 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | ||||| ||||| | || || || || | |||| ||| || || Sbjct 22277 CTTGGCCTTGACGTTCTCAATGGTGTCAGAGGCTTCAACCTCAAGAGTGATGGTCTTTCC 22336 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| || || || ||||| |||||||| Sbjct 22337 GGTGAGGGTCTTCACGAAGATCTGCAT 22363 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || |||||||| || ||| | | | ||||| |||||||| || Sbjct 23414 GTCGACTCCTTCTGGATGTTGTAATCAGACAAGGTGCGTCCA-TCCTCAAGCTGCTTTCC 23472 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | ||||| | ||||| || || ||||| ||||||||||| |||||| ||| Sbjct 23473 GGCGAAGATGAGTCTTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCCTT 23532 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||| | || |||| | || || |||| ||||| ||| || || || || || Sbjct 23533 GACGTTCTCGATGGTATCGGAAGCTTCGACTTCGAGGGTGATGGTCTTTCCAGTGAGGGT 23592 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 23593 CTTGACGAAGATCTGCAT 23610 Score = 102 bits (112), Expect = 8e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 |||||||||||||| || ||| | ||||| | |||||||| || ||||| || |||||| Sbjct 24189 TCCTCGAGCTGCTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGGATTCCCTCCTTG 24248 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||| || ||||| | ||| | ||||| | | |||||| || | ||||| Sbjct 24249 TCTTGGATTTTGGCCTTGACGTTCTCGATGGTGTCAGAAGCCTCCACCTCCAGGGTGATC 24308 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATG 133661 ||||| || |||| ||||| ||||| || |||||| Sbjct 24309 GTTTTTCCAGTCAACGTTTTGACGAAGATTTGCATG 24344 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 ||||| || ||||| |||||||| ||| | || |||||||||||||| || Sbjct 22683 GTGGATTCCTTCTGGATATTGTAGTCGGAGAGAGTTCTTCCATCCTCGAGCTGCTTTCCG 22742 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | ||||| | || ||||| || || || ||||||||||| ||||| |||| Sbjct 22743 GCGAAGATGAGTCTTTGTTGGTCTGGTGGAATTCCTTCCTTGTCCTGAATCTTGGCCTTG 22802 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | || | ||||| | | ||| || || | |||| || || || || |||||| Sbjct 22803 ACATTTTCGATGGTGTCAGAAGCCTCGACTTCCAAAGTGATAGTCTTTCCAGTGAGAGTT 22862 Query 133644 TTTACGAAAATCTGCAT 133660 || |||||||||||||| Sbjct 22863 TTCACGAAAATCTGCAT 22879 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 ||||| || ||||| |||||||| ||| | || |||||||| || || || Sbjct 23186 GTGGATTCCTTCTGGATATTGTAGTCGGAGAGAGTTCTTCCATCCTCGAGTTGTTTTCCG 23245 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || || | ||| || || || ||||| ||||||||||| |||||| |||| Sbjct 23246 GCGAAGATAAGTCTCTGTTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTG 23305 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | |||| || |||| || || || |||| ||||| ||| || || |||| ||| Sbjct 23306 ACGTTTTCAATGGTATCGGAGGCTTCGACTTCGAGGGTGATGGTCTTTCCAGTCAAAGTC 23365 Query 133644 TTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 23366 TTGACAAAGATCTGCAT 23382 Score = 82.4 bits (90), Expect = 7e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 133536 CGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAACC 133595 |||||||| || || ||||| ||||||||||| |||||| ||||| | ||| | Sbjct 22011 CGCTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATG 22070 Query 133596 GTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAATC 133655 || |||| || || || |||| ||||| ||| || || |||| ||| || ||||| || Sbjct 22071 GTATCGGAGGCTTCGACTTCGAGGGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAGATT 22130 Query 133656 TGCAT 133660 ||||| Sbjct 22131 TGCAT 22135 >seq1737 Length=20200 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||||||||| ||||| || ||||| ||| | || | | | ||||| || Sbjct 9803 AAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGTCCA-TCCTCAAG 9861 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||| || ||| | || | || ||||| || || || || ||||||||||| ||| Sbjct 9862 TTGCTTTCCGGCGAAGATCAAGCGTTGCTGATCTGGTGGAATTCCTTCCTTGTCCTGGAT 9921 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | ||| | || |||| | ||| || |||| ||| | || || || Sbjct 9922 CTTAGCCTTGACATTCTCGATGGTATCGGAAGCCTCGACCTCGAGGGTAATCGTCTTACC 9981 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATGGCT 133664 |||||||| || ||||| || |||||| || Sbjct 9982 CGTCAGAGTCTTGACGAAGATTTGCATGACT 10012 >seq126 Length=90294 Score = 86.0 bits (94), Expect = 6e-12 Identities = 209/312 (67%), Gaps = 5/312 (2%) Strand=Plus/Plus Query 148644 TCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCG 148703 || || || || || || || | ||||| || || || ||||| ||| ||| || Sbjct 10439 TCAGCGAGTCCTTGCACACCAAGACCAATTGGACGATGACGCATGTTAGAGTTGCGAGCC 10498 Query 148704 CTCTCGAGCGGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTT 148763 ||| | ||||||| |||| ||||||||||||| | ||| | | |||||| Sbjct 10499 TCCTCAACTGGATAGTAGTTGACATCGATGATCTTGTTCAAATTCTTCGTTATGACCTTT 10558 Query 148764 GT-AATTCTGCGCAGCAATTCAAAATCGTACTTGTCATC--TA-CGATGCATCGGTTCAC 148819 || | || ||| ||| | ||||| |||| | || || || | | ||||||| Sbjct 10559 GTCACCTCAGCG-AGCTTGACGAAATCAAACTTCTTCTCGTTAGTGACGTAACGGTTCAA 10617 Query 148820 GGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTC 148879 ||||| ||||| |||||||| || || ||||||| || || |||||| | ||| || Sbjct 10618 AGCGATGGAGGCGAGATTGCAAACAGCGATCTCATCTGGAGCAGAGTACTCGATGATTTC 10677 Query 148880 GGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCA 148939 | ||| || ||| ||| ||||| || | ||||| ||||| ||||| ||| Sbjct 10678 CGTGCAAAGGTTGGAGCACTTGATGGTTCCGAGGTTCTGCTGATTTGACTTGCGATTGGC 10737 Query 148940 CGCGTCCTTGTA 148951 || |||||||| Sbjct 10738 GGCATCCTTGTA 10749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483328581439640