Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq1189 86.0 1e-11 >seq1189 Length=26616 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395 |||||| | ||||| |||| ||||||||||| ||||||| ||| ||||||| | || Sbjct 11493 TTCAATCGACAACCCACACTCCATAAAATGTCAATGATGGGACATCGAGTCAAAATCTTG 11552 Query 305396 TCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGAT 305455 | | | ||| || ||| | ||| | || | | | || || ||||||||||| ||| Sbjct 11553 CCCTGGTCGACGTTCCGAATGAATTTGTCTGTTACTTCACCGTACAATGCGGATTTCGAT 11612 Query 305456 GGAGATGAAATGAATATGCA 305475 ||||| || |||||| |||| Sbjct 11613 GGAGACGAGATGAATTTGCA 11632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186580740638821