Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1197 86.0 4e-12 >seq1197 Length=26491 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| ||||| |||||||| ||||| | |||||| |||| || | || ||||| || || Sbjct 21663 CTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGTCCGTCCTCGAGCTGCTTTCCAGCGAA 21722 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 |||||||||||||||||| | || | ||||| ||||| ||||| | | || | Sbjct 21723 GATCAAACGCTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATTTT-AGCCTTGACGT 21781 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 || | ||| || | ||| || || | ||||| || || || || | || || | Sbjct 21782 TCTCGATGGTATCAGAGGCTTCAACCTCGAGGGTGATGGTCTTTCCGGTGAGAGTCTTGA 21841 Query 33737 CAAAGATCTGCATA 33750 | |||||||||||| Sbjct 21842 CGAAGATCTGCATA 21855 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||| | || | ||||| || || ||| ||| ||||| |||||||| |||||| Sbjct 22137 CCTCCTCTGAGGCGGAGAACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAG 22196 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || ||| | || || | || |||||||| || || | | |||||||||| | || Sbjct 22197 AGGGTACGTCCATCCTCGAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGA 22256 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || || | | | ||| |||||| | ||| || Sbjct 22257 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGA-CGTTCTCAATGGTGTCAGAGGCTTCAAC 22315 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || || || | || || || ||||||||||| Sbjct 22316 CTCAAGAGTGATGGTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCAT 22363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328642863213120