Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq1197 152 1e-31 seq1737 89.7 1e-12 >seq1197 Length=26491 Score = 152 bits (168), Expect = 1e-31 Identities = 147/189 (78%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| ||||| || |||||||||||||| || ||||||||| ||||| Sbjct 22864 AAAACTCTCACTGGAAAGACTATCACTTTGGAAGTCGAGGCTTCTGACACCATCGAAAAT 22805 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||||| || || ||||||||| || ||| |||||||| |||||| Sbjct 22804 GTCAAGGCCAAGATTCAGGACAAGGAAGGAATTCCACCAGACCAACAAAGACTCATCTTC 22745 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 |||||||||||| | || |||||||| ||| | |||| ||||| ||||||| || || Sbjct 22744 GCCGGAAAGCAGCTCGAGGATGGAAGAACTCTCTCCGACTACAATATCCAGAAGGAATCC 22685 Query 206365 ACTCTTCAC 206373 ||||| ||| Sbjct 22684 ACTCTCCAC 22676 Score = 138 bits (152), Expect = 3e-27 Identities = 148/196 (76%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||||||| | || |||||||||||||| |||| ||||| ||||||||| |||| Sbjct 24329 CAAAACGTTGACTGGAAAAACGATCACCCTGGAGGTGGAGGCTTCTGACACCATCGAGAA 24270 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| || || ||||| || || ||||| || ||| |||||||| ||||| Sbjct 24269 CGTCAAGGCCAAAATCCAAGACAAGGAGGGAATCCCACCAGACCAGCAAAGACTCATCTT 24210 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||||||||||| | || |||||||| ||| | | || |||||| ||||||| ||||| Sbjct 24209 CGCCGGAAAGCAGCTCGAGGATGGAAGAACTCTTTCGGACTACAACATCCAGAAGGAGTC 24150 Query 206364 TACTCTTCACCTTGTT 206379 ||||| || || ||| Sbjct 24149 GACTCTCCATCTCGTT 24134 Score = 131 bits (144), Expect = 4e-25 Identities = 153/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| ||||| || ||||| | ||||| ||| ||| || Sbjct 23607 CAGATCTTCGTCAAGACCCTCACTGGAAAGACCATCACCCTCGAAGTCGAAGCTTCCGAT 23548 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| ||||| || |||||||| || || ||| Sbjct 23547 ACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGATCAGCAA 23488 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||||| |||||||||||||||||| | || |||||| | || ||| | ||||||||| || Sbjct 23487 AGACTCATCTTCGCCGGAAAGCAGCTTGAGGATGGACGCACCTTGTCTGATTACAACATC 23428 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTT 206379 ||||| ||||| ||||| || || ||| Sbjct 23427 CAGAAGGAGTCGACTCTCCATCTCGTT 23401 Score = 113 bits (124), Expect = 1e-19 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| ||||| || |||||| | || || ||| |||||||| | || Sbjct 22348 AAGACCCTCACCGGAAAGACCATCACTCTTGAGGTTGAAGCCTCTGACACCATTGAGAAC 22289 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| || ||||||||| || || || ||||| |||||| Sbjct 22288 GTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCACCAGATCAGCAGAGACTCATCTTC 22229 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 |||||||||||| | || |||||| | || | |||| |||||| |||| || ||||| Sbjct 22228 GCCGGAAAGCAGCTCGAGGATGGACGTACCCTCTCCGACTACAACATCCAAAAGGAGTCC 22169 Query 206365 ACTCTTCACCTTGTT 206379 || |||||| | ||| Sbjct 22168 ACCCTTCACTTGGTT 22154 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || | || ||||| || ||||| | ||||| ||| || || Sbjct 23379 CAGATCTTTGTCAAGACTTTGACTGGAAAGACCATCACCCTCGAAGTCGAAGCCTCCGAT 23320 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| || ||| ||||| ||||| || |||||||| || || || Sbjct 23319 ACCATTGAAAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGATCAACAG 23260 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 |||||||||||||||||||| || | || |||||||| ||| | |||| ||||| || Sbjct 23259 AGACTTATCTTCGCCGGAAAACAACTCGAGGATGGAAGAACTCTCTCCGACTACAATATC 23200 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| || || ||||||||| | ||| | | ||||| Sbjct 23199 CAGAAGGAATCCACTCTTCACTTGGTTCTCCGTCTTCG 23162 Score = 86.0 bits (94), Expect = 1e-11 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 204769 GTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 204828 ||| ||||| || || ||||||| ||| ||||| | | ||| |||||||| || ||||| Sbjct 22676 GTGGAGAGTGGATTCCTTCTGGATATTGTAGTCGGAGAGAGTTCTTCCATCCTCGAGCTG 22735 Query 204829 CTTTCCGGCGAAGATAAGCCGTTGTTG 204855 ||||||||||||||| || | |||||| Sbjct 22736 CTTTCCGGCGAAGATGAGTCTTTGTTG 22762 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||| | | ||| | ||||||||| || || ||||||| ||| ||||| | | ||| Sbjct 23162 CGAAGACGGAGAACCAAGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGAGAGAGTT 23221 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 |||||||| || || || ||||||||||||||||| | |||||| Sbjct 23222 CTTCCATCCTCGAGTTGTTTTCCGGCGAAGATAAGTCTCTGTTGA 23266 Score = 84.2 bits (92), Expect = 5e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 204763 AACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTC 204822 ||| || || ||||| ||||| ||||||| || || |||| ||| || | |||||| || Sbjct 23401 AACGAGATGGAGAGTCGACTCCTTCTGGATGTTGTAATCAGACAAGGTGCGTCCATCCTC 23460 Query 204823 CAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 |||||||||||||||||||| || | ||| ||| Sbjct 23461 AAGCTGCTTTCCGGCGAAGATGAGTCTTTGCTGA 23494 >seq1737 Length=20200 Score = 89.7 bits (98), Expect = 1e-12 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || || || || || ||||| || | || || || ||| || || |||| Sbjct 9994 CAAGACTCTGACGGGTAAGACGATTACCCTCGAGGTCGAGGCTTCCGATACCATCGAGAA 9935 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| ||||| || || || ||||||||| || || ||| | | ||||| Sbjct 9934 TGTCAAGGCTAAGATCCAGGACAAGGAAGGAATTCCACCAGATCAGCAACGCTTGATCTT 9875 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 |||||||||||| | || |||||| | ||| | |||| |||||| ||||||| ||||| Sbjct 9874 CGCCGGAAAGCAACTTGAGGATGGACGTACTCTCTCCGACTACAACATCCAGAAGGAGTC 9815 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 || |||||| | ||| | | ||||| Sbjct 9814 CACCCTTCACTTGGTTCTCCGTCTTCG 9788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181589716732381