Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq126 91.5 1e-13 seq1737 84.2 2e-11 seq1197 82.4 7e-11 >seq126 Length=90294 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 148237 TACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGC 148296 |||||||| || ||| | | |||||||| ||||| || || | ||||||||||| ||| Sbjct 11616 TACGTCTCGATGGCGGCCTGGATGTCGTTTCCGTGGATTCCGATGGCGACGCGCATCAGC 11675 Query 148297 ATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGG 148356 || || ||||| ||||| | | || ||||| |||||||| || || ||| ||| Sbjct 11676 ATCTGTTGTGGCCGTTCAACGATTTCCTTGTTAATCTTGAGGAGGTAAGAGCGTTCCAGG 11735 Query 148357 GTTTTGTAACCAAAGTACTTGTA 148379 || ||| | |||||||| |||| Sbjct 11736 GTCTTGAATCCAAAGTAGCTGTA 11758 >seq1737 Length=20200 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 |||||| || | | | ||||| || || |||||||||||| | ||||| ||| || Sbjct 9799 AACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGTCCATCCTC 9858 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 || || || |||| |||| | || || |||||||| || || ||||| || || Sbjct 9859 AAGTTGCTTTCCGGCGAAGATCAAGCGTTGCTGATCTGGTGGAATTCCTTCCTTGTCCTG 9918 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 || || || | | || | ||||||| | ||| || |||| || | ||| || Sbjct 9919 GATCTTAGCCTTGACATTCTCGATGGTATCGGAAGCCTCGACCTCGAGGGTAATCGTCTT 9978 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 ||| |||||||| || | ||| || ||||||||| Sbjct 9979 ACCCGTCAGAGTCTTGACGAAGATTTGCATGACT 10012 >seq1197 Length=26491 Score = 82.4 bits (90), Expect = 7e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 131908 GCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGA 131967 ||| | |||||| || | | | ||||| ||||| |||||||||||| | |||||| Sbjct 22148 GCGGAGAACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAGAGGGTACGTCC 22207 Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027 ||| |||||||| || |||| |||| || | ||| |||||||| || || ||||| || Sbjct 22208 ATCCTCGAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGAATTCCTTCCTT 22267 Query 132028 ATC 132030 || Sbjct 22268 GTC 22270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476520280455960