Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq3187 127 3e-23 seq433 118 2e-20 seq1272 113 6e-19 seq30 107 3e-17 seq3328 89.7 7e-12 >seq3187 Length=11549 Score = 127 bits (140), Expect = 3e-23 Identities = 139/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 724958 CTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGG 725017 |||| |||| ||||||| ||||||||||| || ||||||||| | |||| ||||||| Sbjct 11138 CTCCTCCAAGGCCATGTCTATCATGAACTCCTTCGTCAACGACGTCTTCGAGCGCATCGC 11079 Query 725018 CACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGAT 725077 | | |||||| ||| || || | || |||||| ||| ||| ||| | ||||| || Sbjct 11078 CGCTGAGGCCTCTCGTCTTGCTCACTACAACAAACGCTCCACCATCTCTTCCCGCGAAAT 11019 Query 725078 CCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGG 725137 ||| || ||||| || ||||| | | || || |||||| ||||||||| || ||||| Sbjct 11018 CCAAACGGCCGTCCGTTTGATCCTTCCAGGAGAGTTGGCCAAGCACGCCGTTTCTGAGGG 10959 Query 725138 CACCA 725142 |||| Sbjct 10958 AACCA 10954 >seq433 Length=49269 Score = 118 bits (130), Expect = 2e-20 Identities = 224/318 (70%), Gaps = 14/318 (4%) Strand=Plus/Minus Query 1456447 AGGTTTGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCGAC 1456506 |||| | ||| ||||||| ||||| || |||||| |||||||| ||||||| || || Sbjct 30064 AGGTCTTCACCGTGACTTCGCCTGCCTCCTCTACTCGATGCTCCAAAACAAGC--TC-AC 30008 Query 1456507 CGACGTGCCCA---AGCAGATCAT-CGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCA 1456562 | | || || | ||||||| ||| || ||||||| || ||| ||||||| | | Sbjct 30007 TCAAGAGCGCATCTACGAGATCATTCGT-GATGCCGTCGCCATTGAGCAAGAGTTCCTTA 29949 Query 1456563 GCGAGTCGCTGCCGGTGGCGCTCATCGGCATGAAC-GCCACCGCTCATGTGCCAGTACAT 1456621 |||| | || || || | | ||||| |||||| | | || | |||| ||||||||| Sbjct 29948 CCGAGGCTCTTCCAGTCGACATGATCGGAATGAACTGTCGCC--TGATGTCCCAGTACAT 29891 Query 1456622 TGAATTTTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACG 1456681 ||| ||| |||||||| | ||||| || | | | || |||| ||||| ||| | Sbjct 29890 TGAGTTT-GTCGCCGATCATCTGCTTGCCGAGTTGGGATGCG-AGAAGTTGTACAAAGTG 29833 Query 1456682 GCCAACCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAG 1456741 ||||| ||| | |||||| ||||| |||| || ||||||||||| |||||| Sbjct 29832 AAGAACCCCTTCGACTTCATGGAGAACATCTCTATCGATGGAAAGACCAACTTCTTCGAG 29773 Query 1456742 CGCCGCGT-GGCGAGTAC 1456758 ||||| ||||||| Sbjct 29772 AAGCGCGTCTCCGAGTAC 29755 >seq1272 Length=25558 Score = 113 bits (124), Expect = 6e-19 Identities = 166/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||| |||||||||||||| || || || | | | | || ||||| | || Sbjct 311 ATCTACCGTGTGCTCAAGCAGGTTCATCCAGACACTG--GAGTC-TCTTCCAA---GGCC 258 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||||||||||||||| || ||||| || | |||| ||||||| | | ||||| | Sbjct 257 ATGTCGATCATGAACTCCTTCGTCAATGATGTCTTCGAGCGCATCGCCGCTGAGGCATCT 198 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || | || ||||||| | || ||| | | ||||| || || || ||||| Sbjct 197 CGTCTTGCTCACTACAACAAGAGATCGACCATCTCCTCCCGCGAAATTCAAACGGCCGTC 138 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || ||||| | | || || || |||| |||||||||||| ||||| |||| Sbjct 137 CGTTTGATCCTTCCAGGAGAGCTCGCCAAGCACGCCGTCTCTGAGGGAACCA 86 >seq30 Length=152714 Score = 107 bits (118), Expect = 3e-17 Identities = 127/172 (74%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| |||||||| || || || |||||| | |||| || |||| | |||| || | Sbjct 69046 ATGTCCATCATGAATTCATTCGTGAACGACGTCTTCGAGCGTATCGCCTCCGAAGCATCT 69105 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || ||||| | || |||||| ||| ||| ||| | || || |||||||||||||| Sbjct 69106 CGTCTGGCTCACTACAACAAACGCTCCACTATCTCATCTCGTGAAATCCAGACCGCCGTT 69165 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || ||| | | || || || |||| ||| |||||||| ||||| |||| Sbjct 69166 CGTCTCATCCTTCCAGGAGAGCTCGCCAAGCATGCCGTCTCTGAGGGTACCA 69217 >seq3328 Length=10910 Score = 89.7 bits (98), Expect = 7e-12 Identities = 135/189 (71%), Gaps = 6/189 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||| |||||||||||||| || || || | | | | || ||||| | || Sbjct 10716 ATCTACCGTGTGCTCAAGCAGGTCCATCCAGACACTG--GAGTC-TCTTCCAA---GGCC 10769 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 |||||||||||||||||||| ||||| ||| | |||| ||||||| | ||||||| | Sbjct 10770 ATGTCGATCATGAACTCGTTCGTCAATGACGTCTTCGAGCGCATCGCCGCCGAGGCATCT 10829 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || | || ||||||| | || ||| | ||||| || || || ||||| Sbjct 10830 CGTCTTGCTCACTACAACAAGAGATCGACCATCTCATCCCGCGAAATTCAAACGGCCGTC 10889 Query 725091 CGCCTGATC 725099 || ||||| Sbjct 10890 CGTTTGATC 10898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176339248500282