Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq1197 136 4e-27 seq1737 98.7 1e-15 >seq1197 Length=26491 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 134486 TCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCC 134545 |||||| | || || | ||||| || || || || |||||||| |||||||||||| Sbjct 21627 TCCTCCACGAAGACGGAGAACGAGATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCGGA 21686 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | |||| | ||| |||||||| || || || || ||||||||||||||||| || || Sbjct 21687 CAAGGTGCGTCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGTGG 21746 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || ||||| || ||||| ||||| ||||| || | || || || | ||| || Sbjct 21747 GATTCCTTCCTTGTCTTGGATTTTAGCCTTGACGTTCTCGATGGTATCAGAGGCTTCAAC 21806 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| || ||||| | ||| || ||||| || ||||| Sbjct 21807 CTCGAGGGTGATGGTCTTTCCGGTGAGAGTCTTGACGAAGATCTGCAT 21854 Score = 122 bits (134), Expect = 9e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||||||||| || | || | ||| || ||||| |||||||| |||||||||||| Sbjct 22135 TTCCTCCTCTGAGGCGGAGAACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCGG 22194 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | ||| | || |||||||| || || || || || | | ||||||||| || | Sbjct 22195 AGAGGGTACGTCCATCCTCGAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTG 22254 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || ||||| || ||||| || || ||||| || | ||||| || | ||| | Sbjct 22255 GAATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCAGAGGCTTCAA 22314 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 | || ||||| ||||| || ||||| | || || ||||| || |||||| Sbjct 22315 CCTCAAGAGTGATGGTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCATT 22364 Score = 102 bits (112), Expect = 8e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||||||||| || | ||||| || || || || ||||| || ||||||||||| Sbjct 24115 TTCCTCCTCTGAGACGGAGAACGAGATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCG 24174 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 || || || |||||||| || || || || || | | ||||| || || | Sbjct 24175 AAAGAGTTCTTCCATCCTCGAGCTGCTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTG 24234 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || || || || ||||| ||||| ||||| || | ||||| || | |||| Sbjct 24235 GGATTCCCTCCTTGTCTTGGATTTTGGCCTTGACGTTCTCGATGGTGTCAGAAGCCTCCA 24294 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || || || || ||||| || || || ||||| ||||| |||||||| Sbjct 24295 CCTCCAGGGTGATCGTTTTTCCAGTCAACGTTTTGACGAAGATTTGCAT 24343 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 ||||||||||| || | ||||| || || || || ||||| || |||||||| || | | Sbjct 23384 CCTCCTCTGAGGCGAAGAACGAGATGGAGAGTCGACTCCTTCTGGATGTTGTAATCAGAC 23443 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || |||| | || || ||||| || || || || || | | |||||||| || || Sbjct 23444 AA-GGTGCGTCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGTCTTTGCTGATCTGGTGG 23502 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || ||||| || ||||| || || ||||| || | || ||||| | ||| || Sbjct 23503 GATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGAAGCTTCGAC 23562 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 ||||| || ||||| || || || | || || ||||| || |||||| Sbjct 23563 TTCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTGACGAAGATCTGCATT 23611 Score = 98.7 bits (108), Expect = 1e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || ||||| ||||||||||||||||| || || || ||||| || ||||| || || Sbjct 21993 TTACCAGCAAAGATCAAACGCTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTG 22052 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 ||||| || | || ||||| | ||| || ||||| || ||||| || || || Sbjct 22053 GCCTTGACGTTCTCGATGGTATCGGAGGCTTCGACTTCGAGGGTGATGGTCTTTCCAGTC 22112 Query 134691 AAAGTTTTAACGAAAATTTGCATT 134714 ||||| || ||||| ||||||||| Sbjct 22113 AAAGTCTTGACGAAGATTTGCATT 22136 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | || || | || | ||| || ||||||||||| || || ||||||||| Sbjct 23156 CCTCCACGAAGACGGAGAACCAAGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGAG 23215 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || || ||||| ||||| || || || || | | ||| ||||| || || Sbjct 23216 AGAGTTCTTCCATCCTCGAGTTGTTTTCCGGCGAAGATAAGTCTCTGTTGATCTGGTGGG 23275 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAAT-GTGTCGGACGATTCCAC 134665 || ||||| || ||||| || || |||| || | |||| || ||||| | ||| || Sbjct 23276 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGA-CGTTTTCAATGGTATCGGAGGCTTCGAC 23334 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| || || || ||||| || || || || ||||| Sbjct 23335 TTCGAGGGTGATGGTCTTTCCAGTCAAAGTCTTGACAAAGATCTGCAT 23382 >seq1737 Length=20200 Score = 98.7 bits (108), Expect = 1e-15 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 134482 CCTTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGT 134541 |||| ||||| | || || | || | ||| || ||||| ||||| || |||||||||| Sbjct 9777 CCTTACCTCCACGAAGACGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGT 9836 Query 134542 CGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGG 134601 || | || | || || || || || || || || ||||| || |||||||| | Sbjct 9837 CGGAGAGAGTACGTCCATCCTCAAGTTGCTTTCCGGCGAAGATCAAGCGTTGCTGATCTG 9896 Query 134602 GCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATT 134661 | || || ||||| || || || || || ||||| || | || ||||| | | Sbjct 9897 GTGGAATTCCTTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTATCGGAAGCCT 9956 Query 134662 CCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || ||||| ||||| || ||||| || | ||| || ||||| |||||||| Sbjct 9957 CGACCTCGAGGGTAATCGTCTTACCCGTCAGAGTCTTGACGAAGATTTGCAT 10008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505301988937720