Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq126 172 8e-38 >seq126 Length=90294 Score = 172 bits (190), Expect = 8e-38 Identities = 302/439 (69%), Gaps = 3/439 (1%) Strand=Plus/Plus Query 68395 GCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAA 68454 || || || ||||| | ||||||||| || || || || || ||||||||||||| Sbjct 9691 GCTGGCTTGGTACGCAAATAGTACATTCCAGTCTTGAGTCCCTTCTTCCATCCGTAGAAG 9750 Query 68455 TGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTT 68514 ||||| ||| | | || ||||| | || || ||||| || | ||||||| | Sbjct 9751 TGCATCGATGTGATGGCTGCGTAGCTTGGCTTAGCCATGTGAATGTTGAGCGATTGAGAT 9810 Query 68515 TGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCC 68574 ||||| ||| | ||||| | ||| || ||||| | || || ||| |||| |||||| Sbjct 9811 TGATCAATGTATGCTCCACGATCGGCGGCCATCTCGATGATCTCCTTCTGAGAGATTTCC 9870 Query 68575 CAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAGGCTCGTA---TTTTGAATGGAT 68631 || | || | | | ||||| |||||||| | | | | |||||||||||| Sbjct 9871 CACACGGTGAGATAGAGTGCCTTGATGTCATCTGGGATTCCGGGAATGTTTTGAATGGAT 9930 Query 68632 CCACCATCGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAA 68691 || | || || | | |||||| ||||||||| |||||||| |||||| ||| Sbjct 9931 CCGTTGTTGGCGATGAGTCGATTCTTCATCTCATCAGTCCACAATCCTCTCTCAACCAAA 9990 Query 68692 ACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAA 68751 | | || | || |||||||| || || || || || || | ||| | ||| | |||| Sbjct 9991 TCCTTGAGCATGTGTGGATTAACAATCTGGAAGTCTCCGGAAAGCACACGACGTGAGTAA 10050 Query 68752 ATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCA 68811 || || ||| ||||| || | ||||| || ||||| || ||||| || || || ||| Sbjct 10051 ATGTTTGAGGTGTATGGCTCAATCGATTCGTTGTTTCCGAGGATTTGCGCGGTGGAAGCA 10110 Query 68812 GTTGGCATAGGTGCCACCA 68830 |||||||| || |||| || Sbjct 10111 GTTGGCATTGGAGCCATCA 10129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686777763560040