Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1197 93.3 4e-14 seq126 82.4 6e-11 >seq1197 Length=26491 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | || | ||||| || | || || || || || |||||||||||| Sbjct 23156 CCTCCACGAAGACGGAGAACCAAGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGAG 23215 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | | || ||||| ||||| |||||| | || || | ||||||||| || || Sbjct 23216 AGAGTTCTTCCATCCTCGAGTTGTTTTCCGGCGAAGATAAGTCTCTGTTGATCTGGTGGG 23275 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || || || ||||||| || | | |||| | || || | |||||| ||| Sbjct 23276 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCAATGGTATCGGAGGCTTCGACT 23335 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCT 27254 || || || || | || || |||| ||| || |||||||| |||||| || || Sbjct 23336 TCGAGGGTGATGGTCTTTCCAGTCAAAGTCTTGACAAAGATCTGCATACCTCCT 23389 >seq126 Length=90294 Score = 82.4 bits (90), Expect = 6e-11 Identities = 253/386 (66%), Gaps = 9/386 (2%) Strand=Plus/Plus Query 131603 GGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAAC 131662 || || |||| || ||||| | |||||| | || || || || |||||||| || Sbjct 11115 GGGCACTCGCATGGGCACATCAACGACCAATCCTGGTCCTTCTCGACACGCTTCATGAAA 11174 Query 131663 AAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATA 131722 | ||| || | ||| | || |||||||| | ||| | |||||||| || | Sbjct 11175 AGATCTGGAATCCAGAGAGCCAGGAACAGATCACGAGCACGCTCCTCTTCTGGTCCGGTG 11234 Query 131723 AtttttttCAAATTTAAA--AAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTG 131780 || || | || ||| || || |||| || || ||||| || || | || | | Sbjct 11235 --TTCTTGCGAAGGGAAACGAACTCGAAAACATCGGCGTGCCATGGCTCGAGGTAAATGG 11292 Query 131781 CCATTGCGCCTTTGCGCTTA---CCGCCTTGATTAACATGACGAACCATGTTGTTGTATA 131837 | | || ||| |||||| || ||||||| |||| ||| | |||||||||| | Sbjct 11293 CGAAGGCTCCTGGGCGCTTGTTGCCTCCTTGATCGACATAACGGGCGGTGTTGTTGTAAA 11352 Query 131838 CGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATG-TAGCTGCCA 131896 | || | ||| || | || |||| |||| ||||| | ||| | | | ||| Sbjct 11353 CACGAAGCATCGGTATGAGTCCATTGGATGTTCCGTTGGTTCCAGCGATGGTCGAT-CCA 11411 Query 131897 TTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAGATTAGTGCG 131956 |||| | ||| || || ||||||||||| || || ||| | |||||||| || ||| Sbjct 11412 GTGGCACGGATCTTATGCACGTTGAGTCCGATTCCACCGGCACTCTTAGAGATAAGGGCG 11471 Query 131957 CATTTGGTTAGAGTGTTATAGATACC 131982 |||| | ||||||| ||||| || Sbjct 11472 CATTGCTTCAGAGTGTCGTAGATTCC 11497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424855364990232