Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq126 113 6e-20 seq11978 93.3 5e-14 seq433 93.3 5e-14 seq330 91.5 2e-13 >seq126 Length=90294 Score = 113 bits (124), Expect = 6e-20 Identities = 292/441 (66%), Gaps = 8/441 (2%) Strand=Plus/Plus Query 110368 ATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAGA-GCT 110426 ||||||||| || ||||||||||| | |||||| |||| | ||||| || | || | Sbjct 9708 ATAGTACATTCCAGTCTTGAGTCCCTTCTTCCATCCGTAGAAGTGCATCGATGTGATGGC 9767 Query 110427 TGGACATCGTTGGACTTTCCATGAAGAGGTTCATACTTTGACTTTGGTCAATGAAGCGCC 110486 || | | |||| | ||||| | ||| | |||| ||| |||||| | | Sbjct 9768 TGCGTAGC-TTGGCTTAGCCATGTGAATGTTGAGCGATTGAGATTGATCAATGTATGCTC 9826 Query 110487 CCCGTTGTGCCGCCATATCAATGACATCCTTCATCTTAATTTCCCAAACTGTGCGATAGA 110546 | || | || ||||| || |||| |||||| |||||||| || ||| |||||| Sbjct 9827 CACGATCGGCGGCCATCTCGATGATCTCCTTCTGAGAGATTTCCCACACGGTGAGATAGA 9886 Query 110547 GATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACCA 110606 | |||||| ||||||||||| | | || || || ||||| || || | | Sbjct 9887 GTGCCTTGATGTCATCTGGGATTCCGGGAATGTTTTGAATGGATCCGTTG---TTGGCGA 9943 Query 110607 TGAG---ATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGT 110663 |||| || |||||| || | | ||| | || ||| | || |||| | || Sbjct 9944 TGAGTCGATTCTTCATCTCATCAGTCCACAATCCTCTCTCAACCAAATCCTTGAGCATGT 10003 Query 110664 GCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGT 110723 | || ||||| || || || | || | | ||| ||||||| |||| Sbjct 10004 GTGGATTAACAATCTGGAAGTCTCCGGAAAGCACACGACGTGAGTAAATGTTTGAGGTGT 10063 Query 110724 ATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTG 110783 |||| |||| |||| || || || | |||||| |||||||| || ||||||||||| | Sbjct 10064 ATGGCTCAATCGATTCGTTGTTTCCGAGGATTTGCGCGGTGGAAGCAGTTGGCATTGGAG 10123 Query 110784 CCATCAAAAGACTGTTACGAA 110804 |||||| ||||||||| |||| Sbjct 10124 CCATCAGAAGACTGTTGCGAA 10144 >seq11978 Length=497 Score = 93.3 bits (102), Expect = 5e-14 Identities = 145/202 (72%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 122383 CGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATAAAGTCAAATGGA 122442 |||||||| |||||||||||||| ||||| | ||||| ||||| ||||| || || Sbjct 255 CGCTTCTCGAAGAAGTTGGTCTTTCCATCGATAGAGATGTTCTCCATGAAGTCGAAGGGG 314 Query 122443 TTCTTCGCGTTCCA-AATGGGTGGCACCCCAACTTGTTTGAGGAGACGATCCGACACATA 122501 |||||| | || | || | ||| ||||||| | ||| | | |||| | ||| | Sbjct 315 TTCTTCACTTTGTACAACTTCTCGCATCCCAACTCG-GCGAGCAAATGATCGGCGACAAA 373 Query 122502 CTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGT-TACATGGGAGTGCGT 122560 ||||||||||| ||||||| | | |||| || ||||| | || ||| ||| || || | Sbjct 374 CTCAATGTACTGGGACATCATGCGACAGTTTATTCCGATTATGTCTAC-TGGAAGAGCCT 432 Query 122561 CCAAGATGAACCCTTTCTCAAT 122582 | || |||| ||| ||||| Sbjct 433 CGGTGAGGAACTCTTGTTCAAT 454 >seq433 Length=49269 Score = 93.3 bits (102), Expect = 5e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 122379 GACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATAAAGTCAAA 122438 ||| |||||||| |||||||||||||| ||||| | ||||| ||||| ||||| || Sbjct 29764 GACGCGCTTCTCGAAGAAGTTGGTCTTTCCATCGATAGAGATGTTCTCCATGAAGTCGAA 29823 Query 122439 TGGATTCTTCGCGTTCCA-AATGGGTGGCACCCCAACTTGTTTGAGGAGACGATCCGACA 122497 || |||||| | || | || | ||| ||||||| | || ||| |||| | | Sbjct 29824 GGGGTTCTTCACTTTGTACAACTTCTCGCATCCCAACTCG-GCAAGCAGATGATCGGCGA 29882 Query 122498 CATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTACATGGGAGTG 122557 || |||||||||||| ||||||| | ||||||| ||||| | || ||| || | Sbjct 29883 CAAACTCAATGTACTGGGACATCAGGCGACAGTTCATTCCGATCATGTCGACTGGAAGAG 29942 Query 122558 CGTCCAAGATGAACCCTTTCTCAAT 122582 | || | |||| ||| |||||| Sbjct 29943 CCTCGGTAAGGAACTCTTGCTCAAT 29967 >seq330 Length=57129 Score = 91.5 bits (100), Expect = 2e-13 Identities = 217/323 (67%), Gaps = 9/323 (3%) Strand=Plus/Minus Query 182487 GGCCAGAAGTAGTGGATCATATTTAGGATGAGACCCTTGATGTGAGAACCATCATTATCG 182546 |||||||||| ||||| | ||| | | || ||||||||||| |||||||| | ||| Sbjct 1845 GGCCAGAAGTGGTGGACGAAATTGATAACAAGTCCCTTGATGTGGGAACCATCTTGATCC 1786 Query 182547 GCATCTGTCATAATCATAAGACGACCATAGCGAAGT-TCA-GAAA----CATCTTGGTAG 182600 ||| | ||| | ||| | || || || || || |||| ||||| | | Sbjct 1785 TGATCAGCCATGACCATCATCTTTCCGTAACGGAGAGTCTTGAAATCATCATCTGTTTCG 1726 Query 182601 T-CTTTTCCTTGT--TGAAGACCAAGGATCTTCTTGAGATCATTGAACTCCTGGTTTGAT 182657 | ||| | |||| ||||| || |||||||| | | | | |||| ||| ||| Sbjct 1725 TACTTCTTTTTGTATTGAAGTCCGAGGATCTTGATCATAGCGTTGATCTCAGCATTTTCA 1666 Query 182658 GTAAGCTGTGCCACCGAAGCGTCCCGAACATTCTTACATTTACCGCGAAGTGGGAACACA 182717 | || || || |||| ||||||||| | || || ||||||||||| ||| Sbjct 1665 GCAACTTGCTTCATGTTTCCGTCACGAACATTCAAAAGCTTTCCACGAAGTGGGAAGACA 1606 Query 182718 CCGTAGTGATCACGACCAACGACAGAGAGACCCGCAACCGCGAGGGTTTTCGCCGAATCA 182777 || || | ||||||||||| ||||| ||||| | ||| || | || || || ||||| Sbjct 1605 CCATACTTGTCACGACCAACAACAGATAGACCGGAAACGGCCAAAGTCTTGGCAGAATCT 1546 Query 182778 CCCTCCGTGACAATGAGAGTACA 182800 ||||| || | ||||| || || Sbjct 1545 CCCTCGGTAAGGATGAGTGTGCA 1523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627912195045600