Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq126 154 2e-32 seq330 105 8e-18 >seq126 Length=90294 Score = 154 bits (170), Expect = 2e-32 Identities = 355/530 (67%), Gaps = 5/530 (1%) Strand=Plus/Plus Query 118343 CCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGG 118402 ||||||||| ||||| || || | ||| |||| ||||| ||| | ||| |||||| Sbjct 10255 CCACATATCGAACTGAAGTTGTCCCTTGGAAACTGGAGATCCTTCATAGGTCGAATATGG 10314 Query 118403 GCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAA 118462 || || || ||||| ||| | || ||||| | || |||| || ||||| || || Sbjct 10315 TCCATCTCTTTCAGCCAACTCGCAACTAGCCTCCAAAGCAGCGTAGTAGATTGTCTCGAA 10374 Query 118463 AATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCA-CAAAATAA 118521 || | |||| | |||| | ||| || | || ||| || || | Sbjct 10375 GATTCTCTTGTTCAAATCTCTGGCTTGCGGGGAGGTGAATG-GATAACGCATCAGCATGA 10433 Query 118522 ATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCC 118581 | ||| ||||| ||||| ||||| || |||||||| ||||| | ||| ||||| || | Sbjct 10434 AGCAATCAGCGAGTCCTTGCACACCAAGACCAATTGGACGATGACGCATGTTAGAGTTGC 10493 Query 118582 GAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAA 118641 |||| ||| || ||||| | || |||||| | | | || | ||| || || | | Sbjct 10494 GAGCCTCCTCAACTGGATAGTAGTTGACATCGATGATCTTGTTCAAATTCTTCGTTATGA 10553 Query 118642 CCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACT 118701 ||||||| | ||| ||||| || ||||||| || | |||| | | |||| || Sbjct 10554 CCTTTGTCACCTCAGCGAGCTTGACGAAATCAAA-CTTCT--TCTCGTTAGTGACGTAAC 10610 Query 118702 TAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTA 118761 | ||||| || || ||||| || |||| | ||||||| | ||| |||||| | Sbjct 10611 GGTTCAAAGCGATGGAGGCGAGATTGCAAACAGCGATCTCATCTGGAGCAGAGTACTCGA 10670 Query 118762 TAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTG 118821 | ||||||||||| | ||| || | ||| ||||| || | ||||| ||||||||||| Sbjct 10671 TGATTTCCGTGCAAAGGTTGGAGCACTTGATGGTTCCGAGGTTCTGCTGATTTGACTTGC 10730 Query 118822 TGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGG 118871 || ||||||||||| ||||| || || ||||| ||||| Sbjct 10731 GATTGGCGGCATCCTTGTAGGTGATGTAAGGAAGACCAGTCTCGATTTGG 10780 >seq330 Length=57129 Score = 105 bits (116), Expect = 8e-18 Identities = 254/384 (66%), Gaps = 9/384 (2%) Strand=Plus/Minus Query 179739 GAGCGATGGCCAGAAGTAGTGGATCATATTGAGGATGAGACCCTTAATGTGTGAACCATC 179798 |||||| |||||||||| ||||| | ||||| | || ||||| ||||| |||||||| Sbjct 1852 GAGCGACGGCCAGAAGTGGTGGACGAAATTGATAACAAGTCCCTTGATGTGGGAACCATC 1793 Query 179799 GTTATCCGCATCCGTCATAATCATAAGCCGACCATAGCGAAG---CTCGGAAACATC--- 179852 | |||| ||| | ||| | ||| | | || || || || || | || |||| Sbjct 1792 TTGATCCTGATCAGCCATGACCATCATCTTTCCGTAACGGAGAGTCTTGAAATCATCATC 1733 Query 179853 ---TTGATAATCCTTACCTTGTTGAAGACCCAAGATCTTCTTGAGATCATTGAACTCTTG 179909 || || | ||| | |||||| || | |||||| | | | | |||| ||| Sbjct 1732 TGTTTCGTACTTCTTTTTGTATTGAAGTCCGAGGATCTTGATCATAGCGTTGATCTCAGC 1673 Query 179910 GTTTGATGTGAGTTGCGCCACTGAAGCATCTCGGACATTTTTACACTTCCCACGGAGAGG 179969 ||| | | |||| || | || || ||||| | ||| ||||| || || Sbjct 1672 ATTTTCAGCAACTTGCTTCATGTTTCCGTCACGAACATTCAAAAGCTTTCCACGAAGTGG 1613 Query 179970 GAACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGC 180029 ||| ||||| || | ||||||||||| ||||| ||||| | ||| || | ||||| || Sbjct 1612 GAAGACACCATACTTGTCACGACCAACAACAGATAGACCGGAAACGGCCAAAGTCTTGGC 1553 Query 180030 GGAATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGCCGTCCCTGCCTTGTT 180089 ||||| ||||| || | |||||| || || | | || | || ||||| | ||| Sbjct 1552 AGAATCTCCCTCGGTAAGGATGAGTGTGCATTGTTGGGAGTTCTTGGTTCCTGCATCGTT 1493 Query 180090 CGCGTCGTCCAACTTGGGAATACC 180113 || || || | ||| || ||||| Sbjct 1492 TGCATCTTCAAGCTTCGGGATACC 1469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618317225755160