Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq126 116 4e-21 seq330 107 2e-18 >seq126 Length=90294 Score = 116 bits (128), Expect = 4e-21 Identities = 299/445 (67%), Gaps = 18/445 (4%) Strand=Plus/Minus Query 105501 TTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTA 105560 |||| |||||||| || ||||||||||||||||| || |||||||| |||||| | || | Sbjct 10144 TTCGCAACAGTCTTCTGATGGCTCCAATGCCAACTGCTTCCACCGCGCAAATCCTCGGAA 10085 Query 105561 ATAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGA-GAAGAACCCTCGCGGGA 105619 | || |||| |||| || ||||| | ||||| || || | | | || | ||| Sbjct 10084 ACAACGAATCGATTGAGCCATACACCTCAAACATTTA-CTCACGTCGTGTGCTTTCCGGA 10026 Query 105620 GAGTTTGTGATTGTCAA--CAAGCAT-CTCGTGGATGACCTCAAAGAGATTGGTCTCTGG 105676 || || |||||| || || ||| ||| |||| | |||| || | ||| Sbjct 10025 GACTTCCAGATTGTTAATCCACACATGCTCAAGGAT---TTGGTTGAGAGAGGATTGTGG 9969 Query 105677 TCCAAGGATATGAAGGAT---CTCATGGTGAA-AGCGGGTGGTTCCATTCAAAATATTGT 105732 | | || |||||| || ||||| | || | | || ||||||||||| ||| Sbjct 9968 ACTGATGAGATGAAGAATCGACTCATCGCCAACAAC----GGATCCATTCAAAACATTCC 9913 Query 105733 GGATATTCCAAATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGA 105792 | || ||| |||| || ||| | || | ||| || ||||||||| |||||| Sbjct 9912 CGGAATCCCAGATGACATCAAGGCACTCTATCTCACCGTGTGGGAAATCTCTCAGAAGGA 9853 Query 105793 TGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCT 105852 |||| || |||||||| |||||||| | |||||||||| |||| | || | Sbjct 9852 GATCATCGAGATGGCCGCCGATCGTGGAGCATACATTGATCAATCTCAATCGCTCAACAT 9793 Query 105853 CTTCATGGAAAGTCCAACGATGTCCAAGC-TCTCTTCTATGCACATGTACAGTTGGAAGA 105911 ||||| | |||| | | || | || | || |||||| | ||| | ||||||| Sbjct 9792 TCACATGGCTAAGCCAA-GCTACGCAGCCATCACATCGATGCACTTCTACGGATGGAAGA 9734 Query 105912 AGGGTCTCAAAACGGGGATGTATTA 105936 |||| ||||| || || ||||| || Sbjct 9733 AGGGACTCAAGACTGGAATGTACTA 9709 Score = 84.2 bits (92), Expect = 3e-11 Identities = 349/542 (64%), Gaps = 19/542 (4%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 ||||| | ||| | |||||||| |||||||| || || || | ||||| | | | | Sbjct 11686 CCACAACAGATGCTGATGCGCGTCGCCATCGGAATCCACGGAAACGACATCCAGGCCGCC 11627 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 104341 | ||||| ||| | |||||| | | | | || || | || || || ||| Sbjct 11626 ATCGAGACGTACAATCTGATGTCTGAGCGCTACATGACCCATGCTTCGCCTACTCTTTTC 11567 Query 104342 AATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAG-GAGGA 104400 || |||| || | || || ||||| |||||| || | | ||| || ||||| Sbjct 11566 AACTCTGGAACCTGCCGTCCACAGATGTCTTCCTGCTTC-TTGTTGACAATGAGCGAGGA 11508 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 || || ||| ||||| | ||||| | | | || || | ||||| ||| | || || Sbjct 11507 TTCGATTCTCGGAATCTACGACACTCTGAAGCAATGCGCCCTTATCTCTAAGAGTGCCGG 11448 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAA 104520 || || || | || | ||| | | | |||| | ||| || || || || Sbjct 11447 TGGAATCGGACTCAACGTGCATAAGATCCGTGCCACTGGATCGACCATCGCTGGAACCAA 11388 Query 104521 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 104580 || ||| |||| | || || |||||||| || | ||| ||| || || ||||| Sbjct 11387 CGGAACATCCAATGGACTCATACCGATGCTTCGTGTTTACAACAACACCGCCCGTTATGT 11328 Query 104581 AAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCA 104634 |||||| || ||| | | ||| | |||| | || || ||||||||||| Sbjct 11327 CGATCAAGGAGGCAACAAGCGCCCA---GGAGCCTTCGCCATTTACCTCGAGCCATGGCA 11271 Query 104635 CGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCA-AGGTGACGAG--GAGGCGCG 104691 ||| ||| | | |||||| || | | || ||| | | ||| || |||| ||| Sbjct 11270 CGCCGATGTTTTCGAGTTCGTT---TCCCTTCGCAAGAACACCGGACCAGAAGAGGAGCG 11214 Query 104692 GTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 104750 ||| || ||||| ||| |||||||||||||||||||| ||||||||| | || ||| Sbjct 11213 -TGCTCGTGATCTGTTCCTGGCTCTCTGGATTCCAGATCTTTTCATGAAGCGTGTCGAGA 11155 Query 104751 AG 104752 || Sbjct 11154 AG 11153 >seq330 Length=57129 Score = 107 bits (118), Expect = 2e-18 Identities = 219/325 (67%), Gaps = 9/325 (3%) Strand=Plus/Minus Query 169139 GGCCAGAAGTAGTGAATCATATTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTATCG 169198 |||||||||| ||| | | ||||| || || ||||||||||||||||| || | ||| Sbjct 1845 GGCCAGAAGTGGTGGACGAAATTGATAACAAGTCCCTTGATGTGGGAACCATCTTGATCC 1786 Query 169199 GCATCCGTCATGATCATGAGACGACCATACCGAAG---CTCGGAAACATC------TTGA 169249 ||| | ||||| ||| | || || || || || | || |||| || Sbjct 1785 TGATCAGCCATGACCATCATCTTTCCGTAACGGAGAGTCTTGAAATCATCATCTGTTTCG 1726 Query 169250 TAGTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGAGATCGTTGAACTCTTGGTTTGAT 169309 || | ||| | |||||| || | |||||| | | | |||||| ||| ||| Sbjct 1725 TACTTCTTTTTGTATTGAAGTCCGAGGATCTTGATCATAGCGTTGATCTCAGCATTTTCA 1666 Query 169310 GTGAGCTGTGTGACAGAGGCATCGCGAACATTCTTACACTTCCCACGAAGAGGGAAGACA 169369 | | || | | | || ||||||||| | ||| |||||||| ||||||||| Sbjct 1665 GCAACTTGCTTCATGTTTCCGTCACGAACATTCAAAAGCTTTCCACGAAGTGGGAAGACA 1606 Query 169370 CCGTAGTGATCACGACCAACGACGGAGAGACCCGCGACTGCGAGAGTCTTCGCCGAGTCA 169429 || || | ||||||||||| || || ||||| | || || | |||||| || || || Sbjct 1605 CCATACTTGTCACGACCAACAACAGATAGACCGGAAACGGCCAAAGTCTTGGCAGAATCT 1546 Query 169430 CCCTCGGTGACGATGAGCGTACATT 169454 |||||||| | |||||| || |||| Sbjct 1545 CCCTCGGTAAGGATGAGTGTGCATT 1521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583149535711640