Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq350 242 1e-58 seq8705 226 9e-54 seq1197 159 1e-33 seq1737 138 3e-27 seq10508 132 1e-25 seq343 104 7e-17 seq253 104 7e-17 seq125 87.8 5e-12 >seq350 Length=55662 Score = 242 bits (268), Expect = 1e-58 Identities = 625/947 (66%), Gaps = 14/947 (1%) Strand=Plus/Plus Query 349281 AAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACTGAGCGTATGATTGGTG 349340 |||| |||| || || ||||| ||||| ||||| || || ||||| || | | || | Sbjct 36270 AAGGAAACAAGACTACACCATCCTACGTGGCATTCACAGACACTGAACGACTCGTCGGAG 36329 Query 349341 ATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTTTTTGATGCTAAGCGAC 349400 | ||||| || |||| || || ||||||| | ||||| || || ||||| || | Sbjct 36330 ACTCTGCGAAGGATCAGGCCGCCCGTAATCCAGAGAATACTGTATTCGATGCGAAAAGGT 36389 Query 349401 TTATTGGTAGAAGTTTTTCTGACAAATCTACA---CAATCTGATCTAAAACATTTTCCTT 349457 | ||||| ||| |||| ||| | || ||| ||| || || |||| || | Sbjct 36390 TGATTGGAAGACGTTTC---GACGAGTCAACAGTTCAAGAAGACTGCAAGCATTGGCCGT 36446 Query 349458 TTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTTGAATATAAAGGTGAAC 349517 | ||||| |||| | || || ||| | | ||||| || ||||| || Sbjct 36447 TCACTGTCAAAGGAAAACAAGGA---AAGCCAGTGGTGGAGGTGGATGTGAAAGGAGAGA 36503 Query 349518 AAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTG 349577 | | ||| || ||||||||||| || | |||||| | || |||||||||| | Sbjct 36504 AGAGACAGTTCAATCCCGAAGAAATCTCGGCGATGGTTCTCCAGAAGATGAAGGAAACCG 36563 Query 349578 CTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTA 349637 | ||| | ||| | || | | || | || ||||| ||||||||||| |||||||| | Sbjct 36564 CGGAAACGTATCTCGGACATTCTGTCAAAGACGCTGTGATTACTGTACCTGCCTATTTCA 36623 Query 349638 ATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAA 349697 | ||| ||| | || ||||| ||||| | || |||||| || | |||| | | Sbjct 36624 ACGATAGTCAGAGACAAGCCACAAAGGATGCAGCCACCATTGCTGGACTCAATGCCATCA 36683 Query 349698 GAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGAC- 349756 |||| || ||||| || |||||||| || | || ||||| || || ||| || | | Sbjct 36684 GAATCATCAATGAGCCAACTGCTGCTGCTTTGGCTTATGGACTGGA-CAAAGGAATCTCG 36742 Query 349757 CAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTA 349816 | || || || || | ||||| ||| | || || ||||| || ||||| || | || Sbjct 36743 GATGAGAAGAACGTTTTGATTTTCGATCTTGGAGGAGGTACATTCGATGTCTCCATCCTT 36802 Query 349817 ACACTTGAAGAGGGA---ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGT 349873 || ||| || ||| || || ||||| || | |||||||| || || ||||||||| Sbjct 36803 ACCATTGCCGAAGGATCCATCTTCGAAGTGAAGTCCACTGCTGGAGACACTCATCTTGGT 36862 Query 349874 GGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGCT 349933 |||||||||||||| | || | || || || | | || || ||||| | || Sbjct 36863 GGAGAAGATTTTGACCAACGAATGCTTCAACACTTCATGACCGAGTTCAAGCGGAAGACT 36922 Query 349934 AAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGT 349993 || |||||| ||||| | || || | || || ||||||| ||||||||| Sbjct 36923 GGAAAGGATATTTCTCCGAATCCCCGTGCCATCAGACGTCTTCGAACTGCTTGTGAACGT 36982 Query 349994 GCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGAT 350053 || ||| | | | ||| || | || || | |||| ||||||| || || Sbjct 36983 GCCAAGAGAACTCTTTCAAGCTCTTCTGAAGCCACCGTTGAGGTTGATTCCCTCTTCGAA 37042 Query 350054 GGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGAATTATGTATGGATCTT 350113 || | ||| ||| || || || |||||||| ||||| ||| | ||| ||||| Sbjct 37043 GGAATCGATCTCTGCTCCAGAATCACTCGTGCTCGCTTTGAGGAACTCTGTGCCGATCTA 37102 Query 350114 TTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAAT 350173 || || || | || ||||| || || | | |||||| ||| || ||| Sbjct 37103 TTCCGAAAGACTCTTGAACCTGTTGAGAAGGCTCTCCGAGATGCGAAATTGGACAAGTCA 37162 Query 350174 CAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAA 350220 ||||||||||||| || || ||||| || ||||| ||| ||||||| Sbjct 37163 AAGATTGATGAAGTCGTCTTGGTTGGAGGATCTACTCGTGTTCCAAA 37209 >seq8705 Length=1774 Score = 226 bits (250), Expect = 9e-54 Identities = 425/619 (69%), Gaps = 22/619 (4%) Strand=Plus/Minus Query 349281 AAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACTGAGCGTATGATTGGTG 349340 |||| |||| ||||||||| ||||| || || || || || || || || || | || | Sbjct 1743 AAGGAAACAAAACAACGCCTTCATATGTCGCCTTCACTGATACAGAACGATTGGTCGGAG 1684 Query 349341 ATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTTTTTGATGCTAAGCGAC 349400 || | |||||| ||||||| ||| |||||| | ||||| || || ||||| ||| ||| Sbjct 1683 ATGCAGCAAAAGATCAAGCAGCTCGAAATCCAGAGAATACAGTATTCGATGCGAAGAGAC 1624 Query 349401 TTATTGGTAGAAGTTTTTCTGACAAATCTACA---CAATCTGATCTAAAACATTTTCCTT 349457 | || || ||| | || ||| | | ||| ||||| || ||||||| || | Sbjct 1623 TGATCGGCAGACGGTTCGATGA---AGCAACAGTTCAATCAGACTGCAAACATTGGCCAT 1567 Query 349458 TTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTTGAATATAAAGGTGAAC 349517 || || |||| | || || ||| | ||||| ||||| ||||| ||| Sbjct 1566 TTGGAGTGAAAGGAAAACAAGGA---AAGCCAGTGATTGAAGTTGAGATGAAAGGAGAAA 1510 Query 349518 AAAAACAATTTTTACCCGAAGAAATTTCATCAATGGT--TTTAGTTAAAATGAAGGAAAT 349575 | | ||||| || |||||||| ||| ||||||| || || || |||||||||| Sbjct 1509 AGAGGCAATTCAATCCGGAAGAAATCTCAGCAATGGTACTTCAG--AAGATGAAGGAAAC 1452 Query 349576 TGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTT 349635 ||| || |||| | || | |||| | ||||| || ||||||||||| || || || Sbjct 1451 TGCAGAGACATACCTGGGACATGCAGTCAAGGATGCAGTCATTACTGTACCTGCATACTT 1392 Query 349636 TAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCT 349695 || || ||| | |||||||||||||| | || ||||| || || || | | Sbjct 1391 CAACGACAGTCAGAGACAAGCAACAAAAGATGCAGCCACGATTGCTGGATTGAACGCCAT 1332 Query 349696 AAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAA---ATGAG 349752 |||| || |||||||| ||||| || || |||| ||||| | || ||| || || Sbjct 1331 TCGAATCATCAATGAACCAACTGCAGCTGCTCTTGCTTATGGATTGGACAAAGGGATCAG 1272 Query 349753 TGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACT 349812 || |||| || ||| | | || || ||| | || || |||||||| ||||| ||| | Sbjct 1271 TG---AAGAGAAGAATGTATTGATCTTCGATCTCGGAGGAGGTACTTTCGATGTTTCAAT 1215 Query 349813 ACTAACACTTGAAGAGGGA---ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCT 349869 || || ||| || ||| || || ||||| ||| |||| || || ||||| ||||| Sbjct 1214 CCTTACCATTGCTGAAGGATCCATCTTCGAAGTCAAATCAACAGCGGGAGATACTCATCT 1155 Query 349870 TGGTGGAGAAGATTTTGAT 349888 || ||||| ||||| ||| Sbjct 1154 CGGAGGAGAGGATTTCGAT 1136 Score = 143 bits (158), Expect = 8e-29 Identities = 318/472 (67%), Gaps = 4/472 (1%) Strand=Plus/Minus Query 350207 ACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAAC-CTTC 350265 || ||| |||| || ||||| || | || || ||||| || || || |||| | | Sbjct 830 ACTCGTGTTCCCAAGATTCAAAAGATGCTCAAGGACTTTTTCAACGGAAAGGAACTCAAC 771 Query 350266 TAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTT 350325 | | ||||| ||||| |||||||| ||||||| || ||||| ||||| ||| | | | Sbjct 770 T-GCTCAATCAATCCCGATGAAGCAGTTGCATTCGGAGCTGCAGTTCAAGCAGCCGTACT 712 Query 350326 ATCTGGAAATAAGAGTTCTAA-AATTGATGATCTATTACTACTAGATGTAACTCCACTTT 350384 || ||| ||| | || || ||| | ||| | |||| | ||||| ||||| | Sbjct 711 GTCCGGAGTCAAG-GATCAAACAATCAAAGATGTTCTACTCGTTGATGTTGCTCCATTGA 653 Query 350385 CGCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTG 350444 |||||| | || || |||||| || ||||| ||| ||| | |||| | | Sbjct 652 GTCTTGGAATCGAGACAGCTGGTGGTGTGATGACCAATCTGATTGATCGAAACACTCGAA 593 Query 350445 TACCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAA 350504 | || ||||| || |||| || | |||| ||| || ||||| |||| || ||| Sbjct 592 TTCCAACAAAGGCATCGAAAACATTCACAACATATGCCGACAATCAACCAGGAGTTTCAA 533 Query 350505 TTCAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATTTA 350564 ||||||| | ||||| |||||||| ||| ||||| || || ||| ||| Sbjct 532 TTCAAGTCTACGAAGGAGAACGTGCCATGACTCGTGATAACCATCGTCTCGGAACATTCG 473 Query 350565 CCCTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATA 350624 | || | ||| ||||| || | ||||||||||||||||||||| ||||||| | Sbjct 472 AATTGAGCGGAATCCCACCTGCTCCACGTGGAGTTCCTCAGATTGAAGTCACTTTCGACA 413 Query 350625 TTGATTCAAATGGTATTTTAAATGTTACCGCAGTTGAAAAATCAAGTGGTAA 350676 | ||| |||| || ||| | ||||| | || | || || |||| ||| || Sbjct 412 TCGATGCAAACGGAATTCTGAATGTGTCAGCTGAGGATAAGTCAACTGGAAA 361 >seq1197 Length=26491 Score = 159 bits (176), Expect = 1e-33 Identities = 178/237 (75%), Gaps = 3/237 (1%) Strand=Plus/Plus Query 140504 TTACATA---CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATT 140560 ||||||| || ||||| | | ||||| |||||||| || ||||| ||||| || || Sbjct 21618 TTACATATCTCCTCCACGAAGACGGAGAACGAGATGAAGGGTCGACTCCTTTTGGATGTT 21677 Query 140561 ATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTG 140620 || || || || || || || || || || || |||||||| ||||| | ||| ||||| Sbjct 21678 GTAGTCGGACAAGGTGCGTCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAAACGCTGCTG 21737 Query 140621 ATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGA 140680 ||| || || |||||||| || || || |||||||| || || || || || | |||||| Sbjct 21738 ATCTGGTGGGATTCCTTCCTTGTCTTGGATTTTAGCCTTGACGTTCTCGATGGTATCAGA 21797 Query 140681 TGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | |||||| || || || | ||||||||||| || || || || || |||||||| Sbjct 21798 GGCTTCAACCTCGAGGGTGATGGTCTTTCCGGTGAGAGTCTTGACGAAGATCTGCAT 21854 Score = 141 bits (156), Expect = 3e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 ||||| | ||||| || ||||| ||||| || || || || || | || || ||||| Sbjct 22152 AGAACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAGAGGGTACGTCCATCC 22211 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || ||||| || ||||| || | |||||||| || ||||||||||| || || Sbjct 22212 TCGAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGAATTCCTTCCTTGTCT 22271 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || || || ||||| | ||||| | |||||| ||||| || | ||| Sbjct 22272 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCAGAGGCTTCAACCTCAAGAGTGATGGTC 22331 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 |||||||| || || || || || ||||||||| Sbjct 22332 TTTCCGGTGAGGGTCTTCACGAAGATCTGCATT 22364 Score = 138 bits (152), Expect = 3e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||| ||||| | | ||||| | |||||||| || || || || ||||| || || Sbjct 23152 CATACCTCCACGAAGACGGAGAACCAAGTGAAGAGTGGATTCCTTCTGGATATTGTAGTC 23211 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | |||| ||||| || ||||||||||| || ||||| || | || ||||| || Sbjct 23212 GGAGAGAGTTCTTCCATCCTCGAGTTGTTTTCCGGCGAAGATAAGTCTCTGTTGATCTGG 23271 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || |||||||| || || || || || || || || || ||||| | ||| || | ||| Sbjct 23272 TGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCAATGGTATCGGAGGCTTC 23331 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || || | |||||||| || | || || ||||| |||||||| Sbjct 23332 GACTTCGAGGGTGATGGTCTTTCCAGTCAAAGTCTTGACAAAGATCTGCAT 23382 Score = 134 bits (148), Expect = 4e-26 Identities = 169/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||| ||||| | | || || | || ||||| || || || || ||||| || || Sbjct 22649 CATACCTCCACGAAGGCGGAGCACCAAGTGGAGAGTGGATTCCTTCTGGATATTGTAGTC 22708 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | |||| ||||| || || || ||||| || ||||| || | ||| || || || Sbjct 22709 GGAGAGAGTTCTTCCATCCTCGAGCTGCTTTCCGGCGAAGATGAGTCTTTGTTGGTCTGG 22768 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||||||||| || |||||||| || || || ||||| || || | ||||| | || Sbjct 22769 TGGAATTCCTTCCTTGTCCTGAATCTTGGCCTTGACATTTTCGATGGTGTCAGAAGCCTC 22828 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 ||||| | || | |||||||| || || ||||| || |||||||||||| Sbjct 22829 GACTTCCAAAGTGATAGTCTTTCCAGTGAGAGTTTTCACGAAAATCTGCATT 22880 Score = 111 bits (122), Expect = 5e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || || || ||||| || | |||||||| || ||||||||||| |||||||| || || Sbjct 23743 TTACCGGCGAAGATGAGTCTCTGCTGATCTGGTGGAATTCCTTCCTTATCCTGGATCTTG 23802 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 || || || || ||||| | ||| || | ||| ||||| ||||| | |||||||| || Sbjct 23803 GCCTTCACGTTCTCAATAGTATCTGAAGCTTCGACTTCGAGTGTGATGGTCTTTCCAGTG 23862 Query 140715 AGTGTTTTTACAAAAATCTGCATT 140738 || ||||| || || ||||||||| Sbjct 23863 AGGGTTTTCACGAAGATCTGCATT 23886 Score = 89.7 bits (98), Expect = 2e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || ||||||||||| | ||| |||||||| || || |||||||| || || || || || Sbjct 21993 TTACCAGCAAAGATCAAACGCTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTG 22052 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 || || || || || || | ||| || | ||| ||||| || || | |||||||| || Sbjct 22053 GCCTTGACGTTCTCGATGGTATCGGAGGCTTCGACTTCGAGGGTGATGGTCTTTCCAGTC 22112 Query 140715 AGTGTTTTTACAAAAATCTGCATT 140738 | || || || || || |||||| Sbjct 22113 AAAGTCTTGACGAAGATTTGCATT 22136 >seq1737 Length=20200 Score = 138 bits (152), Expect = 3e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 140509 TACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAG 140568 |||| ||||| | | ||||| | ||||| || ||||| || || || || || || | Sbjct 9780 TACCTCCACGAAGACGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 9839 Query 140569 ATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAG 140628 | | || || ||||| |||||||| ||||| || ||||| | ||||||||||| || | Sbjct 9840 AGAGAGTACGTCCATCCTCAAGTTGCTTTCCGGCGAAGATCAAGCGTTGCTGATCTGGTG 9899 Query 140629 GAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAA 140688 |||||||||| || ||||| || ||||| || ||||| || || | ||| || | || | Sbjct 9900 GAATTCCTTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTATCGGAAGCCTCGA 9959 Query 140689 CTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || |||| ||||| || || || || || || || || ||||| Sbjct 9960 CCTCGAGGGTAATCGTCTTACCCGTCAGAGTCTTGACGAAGATTTGCAT 10008 >seq10508 Length=888 Score = 132 bits (146), Expect = 1e-25 Identities = 202/288 (70%), Gaps = 0/288 (0%) Strand=Plus/Plus Query 130721 ATCATGTGCAGCTAACATTCCTCCAAGCATAACAAAATCAGCTCCTGCTCCAAATGCTTT 130780 ||| ||| |||| || | |||||| | |||||||||||| ||||| |||||||| || || Sbjct 18 ATCGTGTCCAGCGAAGAGTCCTCCGATCATAACAAAATCGGCTCCAGCTCCAAACGCCTT 77 Query 130781 CGCAATATCCCCGGGAGATTTACAACCCCCATCAGCAATAACATGTCCATTTAATCCATG 130840 ||| | || || ||| |||| || ||||| || || |||||||| | |||||| Sbjct 78 CGCCACGTCTCCAGGATTACTACATCCTCCATCGCTCATCACGTGTCCATTGAGTCCATG 137 Query 130841 TGCCGCATCAGCACACTCTGAAATAGCAGAAAGTTGTGGATATCCAACTCCAGTTACTTT 130900 ||||||||| |||||||| | | ||| | ||||||||||| ||||| | || Sbjct 138 TGCCGCATCGGCACACTCCAACACCGCACTCAACTGTGGATATCCGACTCCGGCCTTCTT 197 Query 130901 TCTTGTAGTACAAACAGCACCTGGACCAATACCAATTTTAACAATATCAGCTCCTGCTAA 130960 | || || || || | || || || || |||| ||| ||||| || ||||| | | Sbjct 198 GCGAGTGGTGCACACGGATCCCGGTCCGATTCCAACTTTGACAATGTCGGCTCCCGAGAG 257 Query 130961 AATTAGTGCTTCGGTCATTTCTCTAGTAGCCACATTACCTGCTATGAT 131008 ||| | ||||| ||| || | || | || || || || ||||| Sbjct 258 AATCAACTCTTCGACCATCTCGCCGGTGACGACGTTTCCAGCCATGAT 305 >seq343 Length=56457 Score = 104 bits (114), Expect = 7e-17 Identities = 241/363 (66%), Gaps = 3/363 (1%) Strand=Plus/Plus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 || |||||| |||| ||||||| | ||||||||| |||| ||||| | || | Sbjct 24230 CCAGAAGAAGTTTCGGCAATGGTCCTCACCAAAATGAAGCAAATCGCTGAGTCTTACCTC 24289 Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651 || | ||| | | || || | ||||| ||||| ||||| || || ||||| | Sbjct 24290 GGACACGAAGTGAAAAACGCCGTCGTCACTGTTCCAGCATATTTCAACGACGCCCAAAGA 24349 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 || || || ||||| || | || || || | |||||| | | || || || || Sbjct 24350 CAGGCCACCAAGGATGCCGGAACTATCGCAGGACTCAATGTTGTTCGCATCATCAACGAG 24409 Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATT 349771 || || ||||| || || || ||||| ||||| || | | || ||| || ||| Sbjct 24410 CCAACAGCTGCTGCCATCGCTTATGGACTTGACAAGAAG---GAAGGAGAGCGCAACATT 24466 Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831 || |||| ||||| || ||||| ||||| || || || || || || | || | ||| Sbjct 24467 CTCGTTTTCGATTTGGGAGGTGGAACTTTCGACGTTTCTCTCCTCACCATCGACAACGGA 24526 Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAAT 349891 |||| |||||| || || || || || || | || ||||||||||| ||| | Sbjct 24527 GTTTTCGAAGTTCTCGCCACCAACGGAGACACTCACTTGGGAGGAGAAGATTTCGATCAA 24586 Query 349892 CGT 349894 ||| Sbjct 24587 CGT 24589 >seq253 Length=65330 Score = 104 bits (114), Expect = 7e-17 Identities = 102/129 (79%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 266274 ACTCATTGTGAAATTCATCCAAGTA-CATTATTAGGTATTTTAGCATCTTGTATTCCATT 266332 |||||||| |||||||||||| || ||| || ||| ||| ||||| |||||||| Sbjct 30133 ACTCATTGCGAAATTCATCCAGCTATGATTCTT-GGTGTTTGTGCATCGATCATTCCATT 30191 Query 266333 TCCAGAACATAATCAAGCACCTCGTCTAACATATCAATGTGCAATGGGTAAACAGGCTAT 266392 ||||| || |||||| |||| ||| || |||||| |||| ||||||||||| ||||| Sbjct 30192 CCCAGATCACAATCAATCACCACGTAACACCTATCAAAGTGCTATGGGTAAACAAGCTAT 30251 Query 266393 GGGTATCTA 266401 |||| |||| Sbjct 30252 GGGTGTCTA 30260 Score = 87.8 bits (96), Expect = 5e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 266972 AATCGGCGATAAATTTTCTAGTCGCCACGGACAAAAAGGTACCATTGGTACGATTATTCC 267031 |||||| || || || | ||| || || ||||| ||||| || |||| || || Sbjct 30875 AATCGGTGACAAGTTCGCCTCTCGTCATGGTCAAAAGGGTACGATGGGTATCATGTATCG 30934 Query 267032 TGAAGAAAATATGCCATTTAATGAAGATGGAATTAGACCTGATATTATTATTAATCCTCA 267091 ||||| ||||||| || | || || ||| ||| || ||||| ||||| |||||||| Sbjct 30935 ACAAGAAGATATGCCTTTCACTGCGGAAGGACTTACTCCAGATATCATTATCAATCCTCA 30994 Query 267092 TGCTATTCCTAGTCGTATGACAATTGGTCAATT 267124 || |||| |||||||||||||||||| || Sbjct 30995 CGCCGTTCCATCTCGTATGACAATTGGTCACTT 31027 >seq125 Length=90409 Score = 87.8 bits (96), Expect = 5e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 54774 GTAATCCACCAACAAATTGTTCAGCTGGAGTAATAGATGATGATATTTTTCATTGGCAAG 54833 || ||||||| || | || || ||||| | | | ||| ||| | || |||||||||| Sbjct 85123 GTGATCCACCCGCACAATGCTCCGCTGGGCCAGTCGGTGACGATTTGTTCCATTGGCAAG 85182 Query 54834 CAACAATTATGGGACCAGAAGATACCCCGTATCAAGGTGGTATATTTGAGTTAAGAATTG 54893 | ||||| ||||||||| ||| | |||||||| || ||| | || | | || Sbjct 85183 CTACAATCATGGGACCACCAGAATCGCCGTATCAGGGAGGTGTTTTCTTCCTCACCATCC 85242 Query 54894 ATTTTCCACAAGATTATCCATTTAAACCTCCAAATGTA 54931 |||||||| ||| |||||||| ||||| ||||| ||| Sbjct 85243 ATTTTCCAACAGACTATCCATTCAAACCACCAAAGGTA 85280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1514958119939583