Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq126 185 1e-41 seq433 95.1 1e-14 seq11978 86.0 7e-12 >seq126 Length=90294 Score = 185 bits (204), Expect = 1e-41 Identities = 383/565 (68%), Gaps = 4/565 (1%) Strand=Plus/Plus Query 79324 AGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCC 79383 || || ||||||||| |||||||||| ||| |||| ||||||||| || || | Sbjct 11109 AGTCCTGGGCACTCGCATGGGCACATCAACGACCAATCCTGGTCCTTCTCGACACGCTTC 11168 Query 79384 ATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCG 79443 ||||| || || || ||||| || ||| ||| || || || |||| ||| || | | Sbjct 11169 ATGAAAAGATCTGGAATCCAGAGAGCCAGGAACAGATCACGAGCACGCTCCTCTTC-TGG 11227 Query 79444 CCCTG-GTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATA 79502 || | |||| || || | || || | | ||||||||||| ||||| || || Sbjct 11228 TCCGGTGTTCTTGCGAAGGGAAACGAACTCGAAAACATCGGCGTGCCATGGCTCGAGGTA 11287 Query 79503 GATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTT 79562 |||||||| | || ||||||| ||| || || | ||| || ||||| |||||||| Sbjct 11288 AATGGCGAAGGCTCCTGGGCGCTTGTTGCCTCCTTGATCGACATAACGGGCGGTGTTGTT 11347 Query 79563 GAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGT 79622 | |||| || ||||| || | || || | || ||||| || || ||| | Sbjct 11348 GTAAACACGAAGCATCGGTATGAGTCCATTGGATGTTCCGTTGGTTCCAGCGATGGTCGA 11407 Query 79623 ACCGCTCGCCCGAATGTTCGAGCA-GTGGATTCCGATGCCCCCGGACCACTTGGAGATGT 79681 || | || || || || ||| || || |||||| || |||| | ||| ||||| Sbjct 11408 TCCAGTGGCACGGATCTT-ATGCACGTTGAGTCCGATTCCACCGGCACTCTTAGAGATAA 11466 Query 79682 GCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCA 79741 | ||||| | ||| || || |||||||| || ||||| || || |||| | | || Sbjct 11467 GGGCGCATTGCTTCAGAGTGTCGTAGATTCCGAGAATCGAATCCTCGCTCATTGTCAACA 11526 Query 79742 GGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGT 79801 ||||||| ||||||||||| | || || | |||||| || || |||| || | Sbjct 11527 AGAAGCAGGAAGACATCTGTGGACGGCAGGTTCCAGAGTTGAAAAGAGTAGGCGAAGCAT 11586 Query 79802 GCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCGC 79861 | || | | | | |||||||| ||||||||| || || | ||| ||||| | Sbjct 11587 GGGTCATGTAGCGCTCAGACATCAGATTGTACGTCTCGATGGCGGCCTGGATGTCGTTTC 11646 Query 79862 CGTGGATGCCGACCGCGACGCGCAT 79886 ||||||| |||| ||||||||||| Sbjct 11647 CGTGGATTCCGATGGCGACGCGCAT 11671 Score = 165 bits (182), Expect = 9e-36 Identities = 380/566 (67%), Gaps = 6/566 (1%) Strand=Plus/Minus Query 19118 ATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTCCGCGAGACATACGAC 19177 ||||| ||||| |||| ||||| || ||||| ||| | | | |||||| ||| | Sbjct 11671 ATGCGCGTCGCCATCGGAATCCACGGAAACGACATCCAGGCCGCCATCGAGACGTACAAT 11612 Query 19178 CTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGAAC 19237 |||||| || | | | || || || |||| || ||||||||| | || || | Sbjct 11611 CTGATGTCTGAGCGCTACATGACCCATGCTTCGCCTACTCTTTTCAACTCTGGAACCTGC 11552 Query 19238 AACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATC 19297 || |||||||| ||| ||| | || | |||| || || ||| || ||| Sbjct 11551 CGTCCACAGATGTCTTCCTGCTTCTTGTTGACAATGAGCGAGGATTCGATTCTCGGAATC 11492 Query 19298 TACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGATCCAC 19357 ||||| || || ||| | ||||| | ||||| ||| | |||| || ||||| || || Sbjct 11491 TACGACACTCTGAAGCAATGCGCCCTTATCTCTAAGAGTGCCGGTGGAATCGGACTCAAC 11432 Query 19358 -TGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGCCGACGG 19416 ||| || ||||| | | ||| | ||| ||| || |||||| | || | || Sbjct 11431 GTGCAT-AAGATCCGTGCCACTGGATCGACCATCGCTGGAACCAACGGAACATCCAATGG 11373 Query 19417 TATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGCGG 19476 || | || ||||| || || | ||||||||| ||| | || ||| | || || ||| Sbjct 11372 ACTCATACCGATGCTTCGTGTTTACAACAACACCGCCCGTTATGTCGATCAAGGAGGCAA 11313 Query 19477 CAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTT 19536 ||| ||| || | |||||||| |||||||||||||||||||| || || | || || Sbjct 11312 CAAGCGCCCAGGAGCCTTCGCCATTTACCTCGAGCCATGGCACGCCGATGTTTTCGAGTT 11253 Query 19537 CCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGC-TG-TCGCGACCTCTTCACG 19594 | | || ||| |||| | ||| || ||| | || || ||| || || ||| | Sbjct 11252 CGTTTCCCTTCGCAAGAACACCG--GACCAGAAGAGGAGCGTGCTCGTGATCTGTTCCTG 11195 Query 19595 GCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCTG 19654 || | |||||||| || || |||||| || || ||||||||| | || ||| || Sbjct 11194 GCTCTCTGGATTCCAGATCTTTTCATGAAGCGTGTCGAGAAGGACCAGGATTGGTCGTTG 11135 Query 19655 ATGTGCCCGCACGAATGCCCTGGCCT 19680 |||||||| ||| ||||| || || Sbjct 11134 ATGTGCCCATGCGAGTGCCCAGGACT 11109 Score = 109 bits (120), Expect = 6e-19 Identities = 134/181 (74%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCAT--AC 78247 || |||||||||||||| || |||||||| ||||||||||||||||| | |||||| | Sbjct 9700 GTACGCAAATAGTACATTCCAGTCTTGAGTCCCTTCTTCCATCCGTAGAAGTGCATCGAT 9759 Query 78248 TCGACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGA 78307 || ||| || || || || ||||| ||||||||||| || || || || | Sbjct 9760 GTGATGGCT--GCGTAGCTTGGCTTAGCCATGTGAATGTTGAGCGATTGAGATTGATCAA 9817 Query 78308 TGTACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGG 78367 |||| || || || ||||| ||||| ||||||| | ||| || | || ||||| | || Sbjct 9818 TGTATGCTCCACGATCGGCGGCCATCTCGATGATCTCCTTCTGAGAGATTTCCCACACGG 9877 Query 78368 T 78368 | Sbjct 9878 T 9878 Score = 89.7 bits (98), Expect = 6e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 19797 TCGAGACCGGCACACCGTACATGTGCTACAAGGACGCCGCGAACGCCAAGTCAAATCAGA 19856 ||||||| || || ||||| ||||||||| ||||| || ||||||||||||| Sbjct 10775 TCGAGACTGGTCTTCCTTACATCACCTACAAGGATGCCGCCAATCGCAAGTCAAATCAGC 10716 Query 19857 AGAACATCGGCGCGATCAAGTCGTCCAACCTGTGTACTGAAATCATGGAGGTTTCCAAGC 19916 ||||| |||| | ||||||| |||||||| || || |||||||| ||| || | Sbjct 10715 AGAACCTCGGAACCATCAAGTGCTCCAACCTTTGCACGGAAATCATCGAGTACTCTGCTC 10656 Query 19917 CGGACGAGACTGCCGTGTGTAATCTGGCGTCC 19948 | || |||| || || || ||||| || ||| Sbjct 10655 CAGATGAGATCGCTGTTTGCAATCTCGCCTCC 10624 Score = 87.8 bits (96), Expect = 2e-12 Identities = 226/340 (66%), Gaps = 11/340 (3%) Strand=Plus/Plus Query 78861 CATCATGAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTT 78920 || ||||||| ||| || || || || || || | | | || || || || |||||||| Sbjct 10426 CAGCATGAAGCAATCAGCGAGTCCTTGCACACCAAGACCAATTGGACGATGACGCATGTT 10485 Query 78921 GCTCTTTCGGGCCGCCTCGGTCGGGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTACG 78980 || || ||| |||| || || |||| |||||||| ||||| || Sbjct 10486 AGAGTTGCGAGCCTCCTCAACTGGATAGTAGTTGACATCGATGATCTTGTTCAAATTCTT 10545 Query 78981 CGTGACGACCCGAGTCACCTCGTACAATTTGGCGAAATCAAAATGATT-TCCTT--TGAT 79037 ||| | |||| |||||||| | ||| |||||||||| | || || || ||| Sbjct 10546 CGTTATGACCTTTGTCACCTCAGCGAGCTTGACGAAATCAAACTTCTTCTCGTTAGTGAC 10605 Query 79038 GAAAGTCGGTAGGCACAGCGATG----CCAGGTTGCACACGGCCGTCTCGTCCGGGCTAG 79093 | || |||| || ||||||| | || ||||| || || |||| || || || Sbjct 10606 GTAA--CGGTT--CAAAGCGATGGAGGCGAGATTGCAAACAGCGATCTCATCTGGAGCAG 10661 Query 79094 AAACCTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGT 79153 | |||||||||||| ||||| | || || |||||||||| |||| ||||| ||| | Sbjct 10662 AGTACTCGATGATTTCCGTGCAAAGGTTGGAGCACTTGATGGTTCCGAGGTTCTGCTGAT 10721 Query 79154 TGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGG 79193 | ||| || ||| ||||||||| ||||| || Sbjct 10722 TTGACTTGCGATTGGCGGCATCCTTGTAGGTGATGTAAGG 10761 >seq433 Length=49269 Score = 95.1 bits (104), Expect = 1e-14 Identities = 140/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 60216 GAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGAAATGACG 60275 |||||| | || || || |||||| | | | || || ||| || | | ||| | Sbjct 29958 GAGTTCCTTACCGAGGCTCTTCCAGTCGACATGATCGGAATGAACTGTCGCCTGATGTCC 29899 Query 60276 CAGTACATTCAGTTTGTCGCGGACCGCCTCATGGCCCAGTTTGGAGAAGGACCAATT-TA 60334 ||||||||| |||||||||| || | || | ||| |||| ||| | | | || || Sbjct 29898 CAGTACATTGAGTTTGTCGCCGATCATCTGCTTGCCGAGTTGGGATGCG-AGAAGTTGTA 29840 Query 60335 CGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTT 60394 | ||||| ||||| ||||||| ||||||| |||||| | || || ||||||||||| Sbjct 29839 CAAAGTGAAGAACCCCTTCGACTTCATGGAGAACATCTCTATCGATGGAAAGACCAACTT 29780 Query 60395 CTTTGAGAAGCGGGTC 60410 ||| |||||||| ||| Sbjct 29779 CTTCGAGAAGCGCGTC 29764 >seq11978 Length=497 Score = 86.0 bits (94), Expect = 7e-12 Identities = 138/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 60216 GAGTTCATCACAGAAGCGCTTCCATGCAAAC-TCATAGGTATGGACGCTGGAGAAATGAC 60274 |||||| |||| || || |||||| | | || | || || || || | | ||| | Sbjct 445 GAGTTCCTCACCGAGGCTCTTCCA-GTAGACATAATCGGAATAAACTGTCGCATGATGTC 387 Query 60275 GCAGTACATTCAGTTTGTCGCGGACCGCCTCATGGCCCAGTTTGGAGAAGGACCAATT-T 60333 ||||||||| |||||||||| || | | | ||| |||| ||| | | | || | Sbjct 386 CCAGTACATTGAGTTTGTCGCCGATCATTTGCTCGCCGAGTTGGGATGCG-AGAAGTTGT 328 Query 60334 ACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACT 60393 || ||||| ||||| ||||||| ||||||| |||||| | || || |||||||||| Sbjct 327 ACAAAGTGAAGAACCCCTTCGACTTCATGGAGAACATCTCTATCGATGGAAAGACCAACT 268 Query 60394 TCTTTGAGAAGCG 60406 |||| |||||||| Sbjct 267 TCTTCGAGAAGCG 255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548420162037840