Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq126 196 5e-45 seq433 86.0 7e-12 seq330 84.2 2e-11 >seq126 Length=90294 Score = 196 bits (216), Expect = 5e-45 Identities = 391/568 (69%), Gaps = 10/568 (2%) Strand=Plus/Minus Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGAC-TACACGCGTGTCCGTGAGACGTACGA 53253 |||||||||||| | || |||||||| ||||| | || || | | ||||||||| | Sbjct 11671 ATGCGCGTCGCCATCGGAATCCACGGAAACGACATCCAGGCC-GCCATCGAGACGTACAA 11613 Query 53254 CTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAA 53313 | ||| | ||| | || || || |||| || || |||||| |||| || Sbjct 11612 TCTGATGTCTGAGCGCTACATGACCCATGCTTCGCCTACTCTTTTCAACTCTGGAACCTG 11553 Query 53314 TCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCAT 53373 | || |||||||| ||||||| || || | |||| || || ||||| ||| || Sbjct 11552 CCGTCCACAGATGTCTTCCTGCTTCTTGTTGACAATGAGCGAGGATTCGATTCTCGGAAT 11493 Query 53374 CTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCA 53433 |||||| || || ||| | || |||| ||||| ||| | | ||||| ||||| || | Sbjct 11492 CTACGACACTCTGAAGCAATGCGCCCTTATCTCTAAGAGTGCCGGTGGAATCGGACTCAA 11433 Query 53434 C-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATG 53492 | ||| || ||||||| | || | | ||| || || ||||| || ||| Sbjct 11432 CGTGCAT-AAGATCCGTGCCACTGGATCGACCATCGCTGGAACCAACGGAACATCCAATG 11374 Query 53493 GAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTG 53552 || || | || ||||| || || | ||||||||| ||||| || ||| | || || || Sbjct 11373 GACTCATACCGATGCTTCGTGTTTACAACAACACCGCCCGTTATGTCGATCAAGGAGGCA 11314 Query 53553 GGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGT 53612 |||||| || | |||||||| ||||||||||| ||||||||||| || | |||| Sbjct 11313 ACAAGCGCCCAGGAGCCTTCGCCATTTACCTCGAGCCATGGCACGCCGATGTTTTCGAGT 11254 Query 53613 TTCTCGAGCTGCGTCTGAATCAGGGTGAC--GAAGAGATGCGCTGC-CGTGACCTGTTTA 53669 | | || || ||| || | ||| |||||| ||| ||| ||||| ||||| Sbjct 11253 TCGTTTCCCTTCGCAAGAA-CACCG-GACCAGAAGAGGAGCG-TGCTCGTGATCTGTTCC 11197 Query 53670 CAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACC 53729 ||||| |||||||| || || |||||| | || ||||||||| |||| |||| Sbjct 11196 TGGCTCTCTGGATTCCAGATCTTTTCATGAAGCGTGTCGAGAAGGACCAGGATTGGTCGT 11137 Query 53730 TGATGTGCCCGAACGAGTGCCCCGGCCT 53757 |||||||||| ||||||||| || || Sbjct 11136 TGATGTGCCCATGCGAGTGCCCAGGACT 11109 Score = 96.9 bits (106), Expect = 4e-15 Identities = 133/184 (72%), Gaps = 8/184 (4%) Strand=Plus/Minus Query 55745 ACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGATCGTGGTGCGTAC 55804 || |||||||| || | |||||| | || || ||| || |||||||| || ||| Sbjct 9878 ACCGTGTGGGAAATCTCTCAGAAGGAGATCATCGAGATGGCCGCCGATCGTGGAGCATAC 9819 Query 55805 ATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCC----TTCACTGGCCAAGTT 55860 || || || || || || || ||||| ||||| || || | | | | ||| | Sbjct 9818 ATTGATCAATCTCAATCGCTCAACATTCACATGGCTAAGCCAAGCTACGCAG-CCA---T 9763 Query 55861 GAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTATCTGCG 55920 | ||||||||||| ||||| |||||||||||||||||||| || ||||||||| |||| Sbjct 9762 CACATCGATGCACTTCTACGGATGGAAGAAGGGACTCAAGACTGGAATGTACTATTTGCG 9703 Query 55921 GACC 55924 ||| Sbjct 9702 TACC 9699 >seq433 Length=49269 Score = 86.0 bits (94), Expect = 7e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 74784 ATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATG 74843 ||||| ||||| ||| || | || ||||| | ||| ||||||||||||||||||||| Sbjct 30124 ATCAACTCATTGGAATGCGTCAATCCTGGCATCAATCCGCGCTTCTTCAACCAAAAGATG 30183 Query 74844 GCACAGAAGGAACCACTGAAGAAGATGCCTTCGAC 74878 | ||| || ||||||||||||||||| ||||| Sbjct 30184 GAGGCGAAAGATCCACTGAAGAAGATGCCCTCGAC 30218 >seq330 Length=57129 Score = 84.2 bits (92), Expect = 2e-11 Identities = 181/265 (68%), Gaps = 8/265 (3%) Strand=Plus/Minus Query 152055 ATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTT 152114 |||||| || ||| || || || || |||||||| || || | ||||| || Sbjct 2557 ATCCTTTCCTCCTTGGAGACGAGTACCGAACTGTCCGATTGGAAGAAGCAAGTTGATATT 2498 Query 152115 GTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCA--GACTCGCTTCA 152172 ||||| || || ||| ||||| | |||||||||||| ||| || |||| ||| Sbjct 2497 GTTGGATCCAACATAATCTTGAGCAAGATTCACAATCGTTCCCATCAACGACT--GTTCT 2440 Query 152173 CCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTC- 152231 ||||| || || |||| |||| |||| ||| || | || || ||||| | || Sbjct 2439 CCGTGATGGTAAGCCGAAAGCTCTGCGACAGCTCCAGCAAGTTGGGCAACCTTGACTTCA 2380 Query 152232 CG-TCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAAC 152290 || | ||||| | |||||| ||| || ||| || || ||||| |||||| |||| Sbjct 2379 CGTTTGTCAGCT--CTCTTGAAACAAGCAAAAAGAACTTTTCGCTGTCCTGGTTTGAAAC 2322 Query 152291 CGTCCACCACGTGAGGAATCGAACG 152315 | ||||||| | ||||| ||||| Sbjct 2321 CATCCACCAAGCATGGAATGGAACG 2297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547111611707800