Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1197 172 6e-38 seq1737 167 3e-36 seq126 98.7 1e-15 >seq1197 Length=26491 Score = 172 bits (190), Expect = 6e-38 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || ||||| ||||| || || || |||||||| | | Sbjct 21854 ATGCAGATCTTCGTCAAGACTCTCACCGGAAAGACCATCACCCTCGAGGTTGAAGCCTCT 21795 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | || | ||||||||||| || |||||||| ||||| || ||||| ||| Sbjct 21794 GATACCATCGAGAACGTCAAGGCTAAAATCCAAGACAAGGAAGGAATCCCACCAGATCAG 21735 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | || || ||||| ||||| |||||||| | || ||| | | ||||| || Sbjct 21734 CAGCGTTTGATCTTCGCTGGAAAGCAGCTCGAGGACGGACGCACCTTGTCCGACTACAAC 21675 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||||||||| || || |||||||| || | |||||||| || ||| Sbjct 21674 ATCCAAAAGGAGTCGACCCTTCATCTCGTTCTCCGTCTTCGTGGAGGA 21627 Score = 165 bits (182), Expect = 9e-36 Identities = 159/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || ||||| || ||||| ||||| || |||||||||||||| | Sbjct 22364 AATGCAGATCTTCGTGAAGACCCTCACCGGAAAGACCATCACTCTTGAGGTTGAAGCCTC 22305 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||||| || | ||||| || || || |||||||| |||||||| ||||| || Sbjct 22304 TGACACCATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCACCAGATCA 22245 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || || || || || ||||| |||||||||| |||||||| | ||||| || Sbjct 22244 GCAGAGACTCATCTTCGCCGGAAAGCAGCTCGAGGATGGACGTACCCTCTCCGACTACAA 22185 Query 27585 TGTCCAAAAGGAATCCACTCTTCA 27608 |||||||||| ||||| ||||| Sbjct 22184 CATCCAAAAGGAGTCCACCCTTCA 22161 Score = 145 bits (160), Expect = 9e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || || || || || || || || |||||||| ||| | || || ||| | Sbjct 22880 AATGCAGATTTTCGTGAAAACTCTCACTGGAAAGACTATCACTTTGGAAGTCGAGGCTTC 22821 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||| | |||| | ||||| || |||||||||||||| |||||||| |||||||| Sbjct 22820 TGACACCATCGAAAATGTCAAGGCCAAGATTCAGGACAAGGAAGGAATTCCACCAGACCA 22761 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || | || || || || || ||||| |||||||||| | || || | ||||| || Sbjct 22760 ACAAAGACTCATCTTCGCCGGAAAGCAGCTCGAGGATGGAAGAACTCTCTCCGACTACAA 22701 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||| |||||||||||||| || | || | || ||||| || || Sbjct 22700 TATCCAGAAGGAATCCACTCTCCACTTGGTGCTCCGCCTTCGTGGAGG 22653 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| | || || ||||| || || || || || || | Sbjct 23382 ATGCAGATCTTTGTCAAGACTTTGACTGGAAAGACCATCACCCTCGAAGTCGAAGCCTCC 23323 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| ||| | ||||| || || || |||||||| ||||| || ||||| || Sbjct 23322 GATACCATTGAAAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGATCAA 23263 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || || || || || ||||||||||||| | || || | ||||| ||| Sbjct 23262 CAGAGACTTATCTTCGCCGGAAAACAACTCGAGGATGGAAGAACTCTCTCCGACTACAAT 23203 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||||||||||||||| | || | |||||||| || || Sbjct 23202 ATCCAGAAGGAATCCACTCTTCACTTGGTTCTCCGTCTTCGTGGAGG 23156 Score = 138 bits (152), Expect = 1e-27 Identities = 163/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||||||||| ||||| ||| | || || || || || || || ||||| ||| | Sbjct 24346 ATCATGCAAATCTTCGTCAAAACGTTGACTGGAAAAACGATCACCCTGGAGGTGGAGGCT 24287 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 ||| | ||| | || | ||||| ||||| || |||||||||||||| || |||||| Sbjct 24286 TCTGACACCATCGAGAACGTCAAGGCCAAAATCCAAGACAAGGAGGGAATCCCACCAGAC 24227 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 ||||| | || || || || || ||||| |||||||||| | || || | ||||| Sbjct 24226 CAGCAAAGACTCATCTTCGCCGGAAAGCAGCTCGAGGATGGAAGAACTCTTTCGGACTAC 24167 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 || |||| ||||| || ||||| ||||| || | ||||| Sbjct 24166 AACATCCAGAAGGAGTCGACTCTCCATCTCGTTCTCCGTCT 24126 Score = 100 bits (110), Expect = 3e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| |||||||| | || || ||||| || || || || || || | Sbjct 22136 AATGCAAATCTTCGTCAAGACTTTGACTGGAAAGACCATCACCCTCGAAGTCGAAGCCTC 22077 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||| | || | ||||| || || || |||||||| ||||| || ||||| || Sbjct 22076 CGATACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGATCA 22017 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAG 27549 ||||||| | || |||||||||||| Sbjct 22016 GCAGCGTTTGATCTTTGCTGGTAAG 21992 Score = 82.4 bits (90), Expect = 9e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || ||||| || ||||| ||||| || |||||||||||||| | Sbjct 24116 AATGCAGATCTTCGTGAAGACTCTCACCGGAAAGACCATCACTCTTGAGGTTGAAGCCTC 24057 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAAT 27512 ||| | ||||| || | ||||| || || || |||||||| ||||| Sbjct 24056 TGACACCATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAAT 24009 >seq1737 Length=20200 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || || || ||||| ||||| || ||||| ||| | Sbjct 10008 ATGCAAATCTTCGTCAAGACTCTGACGGGTAAGACGATTACCCTCGAGGTCGAGGCTTCC 9949 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | ||| | |||||||| || ||||||||||| |||||||| ||||| ||| Sbjct 9948 GATACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAAGGAATTCCACCAGATCAG 9889 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || || | || || || || |||||||| ||||||| ||||| || | ||||| || Sbjct 9888 CAACGCTTGATCTTCGCCGGAAAGCAACTTGAGGATGGACGTACTCTCTCCGACTACAAC 9829 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| ||||| | || | |||||||| || || Sbjct 9828 ATCCAGAAGGAGTCCACCCTTCACTTGGTTCTCCGTCTTCGTGGAGG 9782 >seq126 Length=90294 Score = 98.7 bits (108), Expect = 1e-15 Identities = 135/187 (72%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097 || |||| ||||||||| || |||||||| ||||||||||| ||||| | |||||| || Sbjct 9700 GTACGCAAATAGTACATTCCAGTCTTGAGTCCCTTCTTCCATCCGTAGAAGTGCATCGAT 9759 Query 80098 CTGA--GCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGA 80155 ||| ||| || | | || || ||||| ||||| || || ||||| ||| | Sbjct 9760 GTGATGGCTGCGTA--GCTTGGCTTAGCCATGTGAATGTTGAGCGATTGAGATTGATCAA 9817 Query 80156 TGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTG 80215 || | || |||||||| || ||||| || || || ||| || | |||||||| || | Sbjct 9818 TGTATGCTCCACGATCGGCGGCCATCTCGATGATCTCCTTCTGAGAGATTTCCCACACGG 9877 Query 80216 TACGATA 80222 | |||| Sbjct 9878 TGAGATA 9884 Score = 89.7 bits (98), Expect = 6e-13 Identities = 160/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 80907 GGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCA 80966 ||| || |||||||| || || | ||| || | | | | |||||| |||||||||||| Sbjct 10624 GGAGGCGAGATTGCAAACAGCGATCTCATCTGGAGCAGAGTACTCGATGATTTCCGTGCA 10683 Query 80967 CAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTC 81026 | || || |||| || || || ||||| | ||| ||||||||| ||| || || Sbjct 10684 AAGGTTGGAGCACTTGATGGTTCCGAGGTTCTGCTGATTTGACTTGCGATTGGCGGCATC 10743 Query 81027 CTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAG--GATGGCGTCCCAA 81084 ||||||| ||||| || ||| ||||||| | || | ||| ||| ||||| Sbjct 10744 CTTGTAGGTGATGTAAGGAAGACCAGTCTCGA--TTTGGTTGGAGACAATGTGCTCCCAG 10801 Query 81085 ATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGG 81136 | || || ||||| || ||||| |||| ||||| || ||||| ||| Sbjct 10802 AGCTTACGAGCCTTCACAACCTTACGGACACGTCCTTCTGCTTCATACCTGG 10853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570201606162320