Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq1197 134 1e-26 >seq1197 Length=26491 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||||| ||||| ||| | || || || || || ||| | || Sbjct 21854 ATGCAGATCTTCGTCAAGACTCTCACCGGAAAGACCATCACCCTCGAGGTTGAAGCCTCT 21795 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || |||| ||||| ||||| |||||||| ||||| || ||||| ||||| Sbjct 21794 GATACCATCGAGAACGTCAAGGCTAAAATCCAAGACAAGGAAGGAATCCCACCAGATCAG 21735 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | ||| || || || | || ||| | ||| | ||||| |||||| Sbjct 21734 CAGCGTTTGATCTTCGCTGGAAAGCAGCTCGAGGACGGACGCACCTTGTCCGACTACAAC 21675 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || ||||||||||||||| | ||| | ||| | ||| | || || || Sbjct 21674 ATCCAAAAGGAGTCGACCCTTCATCTCGTTCTCCGTCTTCGTGGAGG 21628 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || ||||| ||| | || |||||||| || ||| | || Sbjct 22363 ATGCAGATCTTCGTGAAGACCCTCACCGGAAAGACCATCACTCTTGAGGTTGAAGCCTCT 22304 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| ||||| || || |||||||| ||||| || ||||| ||||| Sbjct 22303 GACACCATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCACCAGATCAG 22244 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | |||||| || || | || || | ||| | ||||| |||||| Sbjct 22243 CAGAGACTCATCTTCGCCGGAAAGCAGCTCGAGGATGGACGTACCCTCTCCGACTACAAC 22184 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 || ||||||||||| ||| | || |||||| Sbjct 22183 ATCCAAAAGGAGTCCACCCTTCACTTGGTT 22154 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || || ||| | || || || ||||| ||| | ||| Sbjct 23610 ATGCAGATCTTCGTCAAGACCCTCACTGGAAAGACCATCACCCTCGAAGTCGAAGCTTCC 23551 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || |||| ||||| || || |||||||| ||||| || ||||| ||||| Sbjct 23550 GATACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGATCAG 23491 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | |||||| || || | || || | ||| | || ||||||||| Sbjct 23490 CAAAGACTCATCTTCGCCGGAAAGCAGCTTGAGGATGGACGCACCTTGTCTGATTACAAC 23431 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 || || ||||||||||| | ||| | ||| Sbjct 23430 ATCCAGAAGGAGTCGACTCTCCATCTCGTT 23401 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || ||||| |||| || || | || || || || ||||| | || Sbjct 24344 CATGCAAATCTTCGTCAAAACGTTGACTGGAAAAACGATCACCCTGGAGGTGGAGGCTTC 24285 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || |||| ||||| ||||| |||||||| || || || ||||| || || Sbjct 24284 TGACACCATCGAGAACGTCAAGGCCAAAATCCAAGACAAGGAGGGAATCCCACCAGACCA 24225 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 || | | || | |||||| || || | || || | || |||| || ||||| Sbjct 24224 GCAAAGACTCATCTTCGCCGGAAAGCAGCTCGAGGATGGAAGAACTCTTTCGGACTACAA 24165 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGT 27203 ||| || ||||||||||| | ||| | ||| | ||| Sbjct 24164 CATCCAGAAGGAGTCGACTCTCCATCTCGTTCTCCGT 24128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434835433878720