Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_028980.1 Length=62181 Score E Sequences producing significant alignments: (Bits) Value seq765 134 5e-27 >seq765 Length=35493 Score = 134 bits (148), Expect = 5e-27 Identities = 341/516 (66%), Gaps = 16/516 (3%) Strand=Plus/Minus Query 10772 GGGCGAAGGTGTACGCGCCCGTGCTGGTTGAGAAGCAGAAGGCGGTCTGGCCGCAAGCCC 10831 ||||||| |||| |||||||||||| || | ||| || | |||||| | || | Sbjct 4612 GGGCGAACCAGTACCTGCCCGTGCTGGTGGATACCCAGCGCGCCATTTGGCCGGATGCGC 4553 Query 10832 CGGAGCCCTGGACCCTCGCCGGTCTGGTGGAGCAGGAAAGCTGTATCAGCCTGACGCACT 10891 || || | | ||| ||||| | | | ||| |||||||||| ||||||||||| ||| Sbjct 4552 CGACCCCTTCGTTCCTGGCCGGCCAGATCGAGAAGGAAAGCTGCATCAGCCTGACCCACA 4493 Query 10892 CCCGCTGCTGGAACCCGCGGGCGGAGCTGCGCACCCATCGTGAATACGGCTTCGGCTTCG 10951 | |||||||| || || ||||||||||| ||||| | ||| ||| | | Sbjct 4492 GCAAGTGCTGGAATCCCACTGCCCAGCTGCGCACCGCGCGTGAGTGGGGCAGGGGCCTAG 4433 Query 10952 GTCAGGTCACGGTCGCCTATCGCCCGGACGGCTCCGAACGCATGAACGTGTTCAACGAAC 11011 | ||||| || |||||| || |||||||| || | || | || | | || Sbjct 4432 GCCAGGTGACCACCGCCTACCGGCCGGACGGATCGGTTCGGTTCGACATCCAGGAAGAGT 4373 Query 11012 TGCGCAACGCCCACGCCTCCCTCCGCGATTGGACCTGGGAGAACCGCTATGACCCGGGCT 11071 ||||| | | | ||||||| || | |||||| ||| | | || ||| | | Sbjct 4372 TGCGCCAGCGCTATCCCTCCCTGCGTGGCTGGACCACTGAGCGCTGGGCGGATCCGCGTT 4313 Query 11072 TCCAGCTCACGGCCATCGTGGAAATGAACCGGAGCCTGTGGCGGAGGATCGCCGCGAACC 11131 |||| |||| |||||||| || ||| || |||| | | ||| | | Sbjct 4312 ACCAGATCACCGCCATCGTCGAGATGGAC--------AAGGCGATCTACCAGCGCCAGCG 4261 Query 11132 CG--GGCGCAACGGTCACGGACC-AGTGGGCC--TTCGTCCTGTCCAGCTACAACGGCGG 11186 || | ||| |||| | ||||| | | || ||| |||||| ||||||||||||| Sbjct 4260 CGGCGCCGCCACGGACCGGGACCGACT---CCAGTTCACCCTGTCTGGCTACAACGGCGG 4204 Query 11187 GGCGGCGGGCGTCCTACAGGATCGCCGCCTGTGCTCGAACACCCGTGGATGCGACCCGGC 11246 | | ||||| || ||||| ||||| |||||| |||||| || |||||||| Sbjct 4203 CGAATCTGGCGTGCTGCAGGACCGCCGGCTGTGCAGCAACACCGCGGGCTGCGACCCCAG 4144 Query 11247 CCGTTGGTTTGGGCACGTAGAACGCACCAGCCTCAA 11282 ||| ||| ||| ||||| | ||||||||||| || Sbjct 4143 CCGCTGGGATGGCCACGTCGCGCGCACCAGCCTGAA 4108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 198817414386582