Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq1864 129 5e-25 >seq1864 Length=19213 Score = 129 bits (142), Expect = 5e-25 Identities = 299/448 (67%), Gaps = 2/448 (0%) Strand=Plus/Plus Query 6678 CCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATT 6737 |||| ||||| || |||||| | ||||||||||| ||| |||||| | |||||||| | Sbjct 14089 CCATATCTCCACTTCTTTGATACAACTGGCAGGACAACTCTCCATTCTCAACGTAGAACT 14148 Query 6738 GGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGC 6797 | || | ||||| ||||| || | |||| | |||||| || |||||||| Sbjct 14149 GACACATCGTGTGACACGGCGGCAAGACCATTTGCCCAAGATCCGATGGATTCCACGCCG 14208 Query 6798 ACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCG-ATCACGTACTGCAGC 6856 |||| | ||| |||||| || |||||| ||| | || || ||||| | || | Sbjct 14209 ACATGATGATTCTTCTGCTGTC-CGGTTCCTCTTTGATTTGACGAATCACCTCAGCCAAC 14267 Query 6857 TGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGT 6916 || || |||| ||||| | ||||| | | | || || | ||| || || ||| Sbjct 14268 TGATCGACTCCTTGTCCAGTGTAGTCTGTGTGACAATCCACGTATTTCGCTCCGAAATGT 14327 Query 6917 CTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGC 6976 ||||||||||| || || || || || | || || || || ||||| | ||| || | Sbjct 14328 CTCCACTGGAATCCATAAACTGGTCCGAGATCTCCTTCTTCGCGAGAGGTGAATCCAAGA 14387 Query 6977 TTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAGAGC 7036 || || ||||| | ||| || | ||||| |||||||| || | | Sbjct 14388 TTATCGAGAAACGCGCGATCTCCATTCTTCTCCCAAATCTTCACATTTTTGGCCATCAAA 14447 Query 7037 TCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAG 7096 || || || | || | |||||| |||| ||| || | |||||||||||| Sbjct 14448 AGTTTCCCGTCGGTTGATCCGGAAATGAACCAAAGCAACTCTTCAAGAACGCCCTTCCAG 14507 Query 7097 TACACACGTTTCGTCGTCAGCAGCGGAA 7124 ||||| | |||||||||||| || |||| Sbjct 14508 TACACTCTTTTCGTCGTCAGAAGTGGAA 14535 Score = 129 bits (142), Expect = 5e-25 Identities = 299/448 (67%), Gaps = 2/448 (0%) Strand=Plus/Minus Query 34221 TTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGT 34280 |||| || |||||||||||| | ||||||||||||||||| | || ||| |||| |||| Sbjct 14535 TTCCACTTCTGACGACGAAAAGAGTGTACTGGAAGGGCGTTCTTGAAGAGTTGCTTTGGT 14476 Query 34281 TCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACG 34340 || | || | || || || | | || |||||||| ||||| Sbjct 14475 TCATTTCCGGATCAACCGACGGGAAACTTTTGATGGCCAAAAATGTGAAGATTTGGGAGA 14416 Query 34341 CTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACT 34400 | || ||| | ||||| || || | || ||| | ||||| || || || || Sbjct 14415 AGAATGGAGATCGCGCGTTTCTCGATAATCTTGGATTCACCTCTCGCGAAGAAGGAGATC 14356 Query 34401 TGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAAG 34460 | || || || || || |||||||||||||| || || ||| | || || | | Sbjct 14355 TCGGACCAGTTTATGGATTCCAGTGGAGACATTTCGGAGCGAAATACGTGGATTGTCACA 14296 Query 34461 CGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGAT-CGACACCTTGAAGCGG 34519 | ||||| | ||||| |||| || ||| || | ||||| || || | ||| || Sbjct 14295 CAGACTACACTGGACAAGGAGTCGATCAGTTGGCTGAGGTGATTCGTCAAATCAAAGAGG 14236 Query 34520 AACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATG 34579 |||| || |||||| ||| | |||| |||||||| || |||||| | ||| Sbjct 14235 AACCG-GACAGCAGAAGAATCATCATGTCGGCGTGGAATCCATCGGATCTTGGGCAAATG 14177 Query 34580 GCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGC 34639 | | || ||||| ||||| | || || |||||||| | |||||| ||| |||||||| Sbjct 14176 GTCTTGCCGCCGTGTCACACGATGTGTCAGTTCTACGTTGAGAATGGAGAGTTGTCCTGC 14117 Query 34640 CAGCTCTATCAACGATCGGGAGACATGG 34667 ||| | |||||| || ||||| |||| Sbjct 14116 CAGTTGTATCAAAGAAGTGGAGATATGG 14089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448176888343920